Stem-loop mdv2-mir-M27

Accession

MI0005895

Description

Mareks disease virus type 2 mdv2-mir-M27 precursor miRNA

Sequence

ucccucCUUCGUCCGGUGUUCGAGGCGugagacuuuuguauugccGCGUCGAGCACCGUGCUGGAGGAagga
(((.((((((((.((((((((((.((((((.((....)).))).))).)))))))))).)).)))))).)))

Structure

   c      -  C          G   -   g  u 
ucc ucCUUC GU CGGUGUUCGA GCG uga ac u
||| |||||| || |||||||||| ||| ||| ||  
agg AGGAGG CG GCCACGAGCU CGc guu ug u
   a      U  U          G   c   a  u 

Annotation confidence Not enough data

Genome context

Unknown

Mature mdv2-miR-M27-5p

• Accession: MIMAT0004472
• Description: Mareks disease virus type 2 mdv2-miR-M27-5p mature miRNA
• Sequence: 7 - CUUCGUCCGGUGUUCGAGGCG - 27
• Evidence: experimental ; cloned [1], Illumina [2]

Mature mdv2-miR-M27-3p

• Accession: MIMAT0004473
• Description: Mareks disease virus type 2 mdv2-miR-M27-3p mature miRNA
• Sequence: 46 - GCGUCGAGCACCGUGCUGGAGGA - 68
• Evidence: experimental ; cloned [1], Illumina [2]

References

1. PubMed ID: 17459919
   Marek's disease virus type 2 (MDV-2)-encoded microRNAs show no sequence conservation with those encoded by MDV-1
   "Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Sewer A, Zavolan M, Nair V"
   "J Virol (2007) 81:7164-7170


2. PubMed ID: 19328516
   MicroRNAs of Gallid and Meleagrid herpesviruses show generally conserved genomic locations and are virus-specific
   "Waidner LA, Morgan RW, Anderson AS, Bernberg EL, Kamboj S, Garcia M, Riblet SM, Ouyang M, Isaacs GK, Markis M, Meyers BC, Green PJ, Burnside J"
   "Virology (2009) 388:128-136