Stem-loop cel-mir-1022

Accession

MI0005900

Description

Caenorhabditis elegans cel-mir-1022 precursor miRNA

Sequence

35167 reads, 154 reads per million, 15 experiments

gguccaaaaucggcAAGAUCAUUGUUAGGACGCCAUCuugaagcaauauaaagAUGAUAGUCCAAUGAUGAUCCAGCuguucaaggcu
((((......((((..((((((((((.((((..((((((...........))))))...))))))))))))))..)))).....))))

Structure

    caaaau    AA          A    -GC      gaag 
gguc      cggc  GAUCAUUGUU GGAC   CAUCuu    c
||||      ||||  |||||||||| ||||   ||||||    a
ucgg      guCG  CUAGUAGUAA CCUG   GUAgaa    a
    -aacuu    AC          -    AUA      auau 

Annotation confidence Medium

Genome context

chrX: 6435425-6435512 [-]

Mature cel-miR-1022-5p

• Accession: MIMAT0005523
• Description: Caenorhabditis elegans cel-miR-1022-5p mature miRNA
• Sequence: 15 - AAGAUCAUUGUUAGGACGCCAUC - 37
• Evidence: experimental ; cloned [1], Illumina [2,4], CLIPseq [3]

Mature cel-miR-1022-3p

• Accession: MIMAT0020357
• Description: Caenorhabditis elegans cel-miR-1022-3p mature miRNA
• Sequence: 54 - AUGAUAGUCCAAUGAUGAUCCAGC - 77
• Evidence: experimental ; Illumina [4]

References

1. PubMed ID: 19460142
   Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
   Kato M, de Lencastre A, Pincus Z, Slack FJ
   Genome Biol (2009) 10:R54


2. PubMed ID: 20062054
   Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans
   "Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo GW"
   "Nat Struct Mol Biol (2010) 17:173-179


3. PubMed ID: 17652138
   Distinct ribonucleoprotein reservoirs for microRNA and siRNA populations in C. elegans
   "Gu SG, Pak J, Barberan-Soler S, Ali M, Fire A, Zahler AM"
   "RNA (2007) 13:1492-1504


4. PubMed ID: 21307183
   Improved annotation of C. elegans microRNAs by deep sequencing reveals structures associated with processing by Drosha and Dicer
   "Warf MB, Johnson WE, Bass BL"
   "RNA (2011) 17:563-577