Stem-loop ppt-MIR160e

Accession

MI0005901

Description

Physcomitrella patens ppt-MIR160e precursor miRNA

Literature search

3 open access papers mention ppt-MIR160e
(9 sentences)

Sequence

398957 reads, 16716.0 reads per million, 10 experiments

cugcagaaaucaaugggggaaacuggcacUGCCUGGCUCCCUGUAUGCCAcuugcgaauuuuggcaaaacuuguggcaggguacguagcugCCAUACAGGGAGUCAGACAGAccuugcaucuucccggauucucauga
.((.((((.((...((((((..(.((..(((.(((((((((((((((.((.(((((.((((((.((.......)).)))))).))))).)).))))))))))))))).)))..)).)..))))))..))))))))...

Structure

--c  c    a  aau      aa u  ca   C               C  c     a      g  aa 
   ug agaa uc   ggggga  c gg  cUG CUGGCUCCCUGUAUG CA uugcg auuuug ca  a
   || |||| ||   ||||||  | ||  ||| ||||||||||||||| || ||||| |||||| ||  c
   ac ucuu ag   ccuucu  g uc  GAC GACUGAGGGACAUAC gu gaugc ugggac gu  u
agu  -    -  -gc      ac u  cA   A               C  c     a      g  gu 

Annotation confidence High

Genome context

Chr22: 7580013-7580150 [+]

Mature ppt-miR160e-5p

• Accession: MIMAT0005034
• Description: Physcomitrella patens ppt-miR160e-5p mature miRNA
• Sequence: 30 - UGCCUGGCUCCCUGUAUGCCA - 50
• Evidence: experimental ; 454 [1]

Mature ppt-miR160e-3p

• Accession: MIMAT0053683
• Description: Physcomitrella patens ppt-miR160e-3p mature miRNA
• Sequence: 92 - CCAUACAGGGAGUCAGACAGA - 112
• Evidence: experimental ; unknown

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769