Stem-loop ppt-MIR160f

Accession

MI0005902

Description

Physcomitrella patens ppt-MIR160f precursor miRNA

Literature search

3 open access papers mention ppt-MIR160f
(9 sentences)

Sequence

55375 reads, 2326.0 reads per million, 10 experiments

guucaugguugaacgguggggaguuggacUGCCUGGCUCCCUGUAUGCCAccugcggggcuugucaaaaugauugccaggcugcauagcugGCAUCCAGGGAGCCAGACAGAccuuucucuugccucauccggguccc
(((((....)))))(((((((((..((.(((.(((((((((((.((((((.(((.(.((((((.(((.....))).)))))).).))).)))))).))))))))))).))).)).))).)))))).............

Structure

guucaugguugaac      -   uu  a   C           U      c   c g      u   a 
              gguggg gag  gg cUG CUGGCUCCCUG AUGCCA cug g ggcuug caa a
              |||||| |||  || ||| ||||||||||| |||||| ||| | |||||| ||| u
              ccguuc cuu  cc GAC GACCGAGGGAC UACGgu gau c ucggac guu g
-cccugggccuacu      u   -u  A   A           C      c   a g      c   a 

Annotation confidence High

Genome context

Chr09: 9548423-9548560 [-]

Mature ppt-miR160f-5p

• Accession: MIMAT0005035
• Description: Physcomitrella patens ppt-miR160f-5p mature miRNA
• Sequence: 30 - UGCCUGGCUCCCUGUAUGCCA - 50
• Evidence: experimental ; 454 [1]

Mature ppt-miR160f-3p

• Accession: MIMAT0053684
• Description: Physcomitrella patens ppt-miR160f-3p mature miRNA
• Sequence: 92 - GCAUCCAGGGAGCCAGACAGA - 112
• Evidence: experimental ; unknown

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769