Stem-loop ppt-MIR160g

Accession

MI0005903

Description

Physcomitrella patens ppt-MIR160g precursor miRNA

Literature search

3 open access papers mention ppt-MIR160g
(9 sentences)

Sequence

40486 reads, 1749.0 reads per million, 10 experiments

cucaugaaaucaauggggaauauuggaccUGCCUGGCUCCUUGUAUGCCAucugcgaagcuugacaaaacuauugccaggguacauagcugCCAUGCAGGGAGUCAGACAGAccguacgucuucccagauuuacaugc
..(((((((((..((((((....(((..(((.(((((((((((((((.((.(((.(.(.((((.(((.....))).)))).).).))).)).))))))))))))))).))).)))......))))))))))).)))).

Structure

cu    -     aa      --auau   ac   C               C  u   c a g    a   a 
  caug aaauc  ugggga      ugg  cUG CUGGCUCCUUGUAUG CA cug g a cuug caa a
  |||| |||||  ||||||      |||  ||| ||||||||||||||| || ||| | | |||| ||| c
  guac uuuag  acccuu      gcc  GAC GACUGAGGGACGUAC gu gau c u ggac guu u
-c    a     --      cugcau   -A   A               C  c   a a g    c   a 

Annotation confidence High

Genome context

Chr19: 13800321-13800458 [-]

Mature ppt-miR160g-5p

• Accession: MIMAT0005036
• Description: Physcomitrella patens ppt-miR160g-5p mature miRNA
• Sequence: 30 - UGCCUGGCUCCUUGUAUGCCA - 50
• Evidence: experimental ; 454 [1]

Mature ppt-miR160g-3p

• Accession: MIMAT0053685
• Description: Physcomitrella patens ppt-miR160g-3p mature miRNA
• Sequence: 92 - CCAUGCAGGGAGUCAGACAGA - 112
• Evidence: experimental ; unknown

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769