Stem-loop ppt-MIR160h

Accession

MI0005904

Description

Physcomitrella patens ppt-MIR160h precursor miRNA

Literature search

3 open access papers mention ppt-MIR160h
(9 sentences)

Sequence

3489 reads, 145.0 reads per million, 10 experiments

uuaguucagcauggggagauaucggaucCGCCUGGCUCCUUGUAUGCCAacugagaagcuuguugaacauuuugccaggauucauagcugGCACUCAGGGAGUCAAGCAGGccauuggucuugccaugacuuucac
.......(((((((.(((((...((.((.((.((((((((((..(((((.(((.(((.((((.((((...)))).)))).))).))).)))))..)))))))))).)).))))....))))).))))).)).....

Structure

uuaguuc  -     g     -auc  a  C  C          UA     a   a   g    u    c 
       ag caugg gagau    gg uc GC UGGCUCCUUG  UGCCA cug gaa cuug ugaa  
       || ||||| |||||    || || || ||||||||||  ||||| ||| ||| |||| |||| a
       uc guacc uucug    cc GG CG ACUGAGGGAC  ACGgu gau cuu ggac guuu  
--cacuu  a     g     guua  -  A  A          UC     c   a   a    c    u 

Annotation confidence High

Genome context

Chr21: 10138798-10138933 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ppt-MIR160h

Mature ppt-miR160h-5p

• Accession: MIMAT0005037
• Description: Physcomitrella patens ppt-miR160h-5p mature miRNA
• Sequence: 29 - CGCCUGGCUCCUUGUAUGCCA - 49
• Evidence: experimental ; 454 [1]

Mature ppt-miR160h-3p

• Accession: MIMAT0053686
• Description: Physcomitrella patens ppt-miR160h-3p mature miRNA
• Sequence: 91 - GCACUCAGGGAGUCAAGCAGG - 111
• Evidence: experimental ; unknown

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769