Stem-loop ppt-MIR160h

Accession

MI0005904

Description

Physcomitrella patens ppt-MIR160h precursor miRNA

Literature search

3 open access papers mention ppt-MIR160h
(9 sentences)

Sequence

uuaguucagcauggggagauaucggaucCGCCUGGCUCCUUGUAUGCCAacugagaagcuuguugaacauuuugccaggauucauagcuggcacucagggagucaagcaggccauuggucuugccaugacuuucac
.......(((((((.(((((...((.((.((.((((((((((..(((((.(((.(((.((((.((((...)))).)))).))).))).)))))..)))))))))).)).))))....))))).))))).)).....

Structure

uuaguuc  -     g     -auc  a  C  C          UA     a   a   g    u    c 
       ag caugg gagau    gg uc GC UGGCUCCUUG  UGCCA cug gaa cuug ugaa  
       || ||||| |||||    || || || ||||||||||  ||||| ||| ||| |||| |||| a
       uc guacc uucug    cc gg cg acugagggac  acggu gau cuu ggac guuu  
--cacuu  a     g     guua  -  a  a          uc     c   a   a    c    u 

Annotation confidence Not enough data

Genome context

Chr21: 10138798-10138933 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ppt-MIR160h

Mature ppt-miR160h

• Accession: MIMAT0005037
• Description: Physcomitrella patens ppt-miR160h mature miRNA
• Sequence: 29 - CGCCUGGCUCCUUGUAUGCCA - 49
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769