Stem-loop ppt-MIR160i

Accession

MI0005905

Description

Physcomitrella patens ppt-MIR160i precursor miRNA

Literature search

3 open access papers mention ppt-MIR160i
(9 sentences)

Sequence

13395 reads, 562.0 reads per million, 10 experiments

cguuagcacggaauaugggauacuggaucCGCCUGGCUCCCUGUAUGCCAccugcgaagcaugcuaaagguuuuugccaggauuugcagcugGCGUUCAGGGAGUCAAGCAGGccucaagucuucccguaaccagcgcc
.....((.(((..(((((((.(((.((.((((.((((((((((.((((((.(((((((...((.((((....)))).))...))))))).)))))).)))))))))).)).))..)).)))..))))))).)).).)).

Structure

cguua  a -  aa       -u   g  -u  -  C          U      c       gca  c    g 
     gc c gg  uauggga  acu ga  cC GC UGGCUCCCUG AUGCCA cugcgaa   ug uaaa g
     || | ||  |||||||  ||| ||  || || |||||||||| |||||| |||||||   || ||||  
     cg g cc  augcccu  uga cu  GG CG ACUGAGGGAC UGCGgu gacguuu   ac guuu u
----c  c a  -a       uc   a  cc  A  A          U      c       agg  c    u 

Annotation confidence High

Genome context

Chr21: 10139826-10139964 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ppt-MIR160i

Mature ppt-miR160i-5p

• Accession: MIMAT0005038
• Description: Physcomitrella patens ppt-miR160i-5p mature miRNA
• Sequence: 30 - CGCCUGGCUCCCUGUAUGCCA - 50
• Evidence: experimental ; 454 [1]

Mature ppt-miR160i-3p

• Accession: MIMAT0053687
• Description: Physcomitrella patens ppt-miR160i-3p mature miRNA
• Sequence: 93 - GCGUUCAGGGAGUCAAGCAGG - 113
• Evidence: experimental ; unknown

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769