Stem-loop ppt-MIR166c

Accession

MI0005906

Description

Physcomitrella patens ppt-MIR166c precursor miRNA

Literature search

2 open access papers mention ppt-MIR166c
(5 sentences)

Sequence

316265 reads, 13229.0 reads per million, 10 experiments

acuuggugcaacaugggacuuuaucguggGGAAUGCCGUCUGGACCGGAGCUguguguccacucugcaucaaagcuUCGGACCAGGCUUCAUUCCCCucgagggaguuucauagcagugcuau
...((((((..(((((((((((.(((.((((((((..((((((.((((((((.(((((.......))).)).)))))))).))))))..)))))))).))).)))))))))).)..)))))).

Structure

acu      aa -          a   u        CC      A        g  -   cc 
   uggugc  c augggacuuu ucg ggGGAAUG  GUCUGG CCGGAGCU ug ugu  a
   ||||||  | |||||||||| ||| ||||||||  |||||| |||||||| || |||  c
   aucgug  g uacuuugagg agc CCCCUUAC  CGGACC GGCUucga ac acg  u
--u      ac a          g   u        UU      A        a  u   uc 

Annotation confidence High

Genome context

Chr06: 13227780-13227902 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ppt-MIR166c

Mature ppt-miR166c-5p

• Accession: MIMAT0053688
• Description: Physcomitrella patens ppt-miR166c-5p mature miRNA
• Sequence: 30 - GGAAUGCCGUCUGGACCGGAGCU - 52
• Evidence: experimental ; unknown

Mature ppt-miR166c-3p

• Accession: MIMAT0005039
• Description: Physcomitrella patens ppt-miR166c-3p mature miRNA
• Sequence: 77 - UCGGACCAGGCUUCAUUCCCC - 97
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769