Stem-loop ppt-MIR166d

Accession

MI0005907

Description

Physcomitrella patens ppt-MIR166d precursor miRNA

Literature search

2 open access papers mention ppt-MIR166d
(5 sentences)

Sequence

375593 reads, 15562.0 reads per million, 10 experiments

cauauuagucauaugcggcuuguccuuggGGAAUGAUGAUUGGACCGAAGUuuuuuagcguugguuugcccaauuaaagcuUCGGACCAGGCUUCAUUCCCCucguagaaguugcaugaugaugcaau
.......((((((((((((((.(.(..(((((((((...((((.((((((((((.....(((((.....))))).)))))))))).))))...)))))))))..).).))))))))).))))).....

Structure

cauauua     -         g c uu         UGA    A          uuagc     u 
       gucau augcggcuu u c  ggGGAAUGA   UUGG CCGAAGUuuu     guugg u
       ||||| ||||||||| | |  |||||||||   |||| ||||||||||     ||||| u
       uagua uacguugaa a g  CCCCUUACU   GACC GGCUucgaaa     uaacc g
--uaacg     g         g u cu         UCG    A          ----u     c 

Annotation confidence High

Genome context

Chr06: 13227958-13228085 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ppt-MIR166d

Mature ppt-miR166d-5p

• Accession: MIMAT0053689
• Description: Physcomitrella patens ppt-miR166d-5p mature miRNA
• Sequence: 30 - GGAAUGAUGAUUGGACCGAAGU - 51
• Evidence: experimental ; unknown

Mature ppt-miR166d-3p

• Accession: MIMAT0005040
• Description: Physcomitrella patens ppt-miR166d-3p mature miRNA
• Sequence: 82 - UCGGACCAGGCUUCAUUCCCC - 102
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769