Stem-loop ppt-MIR166d

Accession

MI0005907

Description

Physcomitrella patens ppt-MIR166d precursor miRNA

Literature search

2 open access papers mention ppt-MIR166d
(5 sentences)

Sequence

cauauuagucauaugcggcuuguccuuggggaaugaugauuggaccgaaguuuuuuagcguugguuugcccaauuaaagcuUCGGACCAGGCUUCAUUCCCCucguagaaguugcaugaugaugcaau
.......((((((((((((((.(.(..(((((((((...((((.((((((((((.....(((((.....))))).)))))))))).))))...)))))))))..).).))))))))).))))).....

Structure

cauauua     -         g c uu         uga    a          uuagc     u 
       gucau augcggcuu u c  ggggaauga   uugg ccgaaguuuu     guugg u
       ||||| ||||||||| | |  |||||||||   |||| ||||||||||     ||||| u
       uagua uacguugaa a g  CCCCUUACU   GACC GGCUucgaaa     uaacc g
--uaacg     g         g u cu         UCG    A          ----u     c 

Annotation confidence Not enough data

Genome context

Chr06: 13227958-13228085 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ppt-MIR166d

Mature ppt-miR166d

• Accession: MIMAT0005040
• Description: Physcomitrella patens ppt-miR166d mature miRNA
• Sequence: 82 - UCGGACCAGGCUUCAUUCCCC - 102
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769