Stem-loop ppt-MIR166e

Accession

MI0005908

Description

Physcomitrella patens ppt-MIR166e precursor miRNA

Literature search

2 open access papers mention ppt-MIR166e
(5 sentences)

Sequence

267151 reads, 11291.0 reads per million, 10 experiments

aaugugcuuuuggaguugugaaccuugcugugaGGAAUGCCGCAUGGACCGAAGcuaugugcuccaucuuaacguggugguauugauacuacguuUCGGACCAGGCUUCAUUCCCCucagcgcaguuucaucauggugauggacgg
...((.(.((....((.(((((.(((((((.(.((((((..((.(((.(((((((...(((..(((((.......)))))......)))...))))))).))).))..)))))).).))))).)).))))).))...)).).))..

Structure

aau  g u  ugga  u     c  -     u a      CC  A   A       uau   ----cu     uu 
   gu c uu    gu gugaa cu ugcug g GGAAUG  GC UGG CCGAAGc   gug      ccauc  a
   || | ||    || ||||| || ||||| | ||||||  || ||| |||||||   |||      |||||  a
   ca g ag    ua uacuu ga gcgac C CCUUAC  CG ACC GGCUuug   cau      ggugg  c
-gg  g u  -ugg  c     u  c     u C      UU  G   A       cau   aguuau     ug 

Annotation confidence High

Genome context

Chr14: 8707192-8707337 [+]

Mature ppt-miR166e-5p

• Accession: MIMAT0053690
• Description: Physcomitrella patens ppt-miR166e-5p mature miRNA
• Sequence: 34 - GGAAUGCCGCAUGGACCGAAG - 54
• Evidence: experimental ; unknown

Mature ppt-miR166e-3p

• Accession: MIMAT0005041
• Description: Physcomitrella patens ppt-miR166e-3p mature miRNA
• Sequence: 96 - UCGGACCAGGCUUCAUUCCCC - 116
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769