miRBase entry: ppt-MIR166e

Stem-loop ppt-MIR166e


Accession
MI0005908
Description
Physcomitrella patens ppt-MIR166e precursor miRNA
Gene family
MIPF0000004; MIR166

Literature search
2 open access papers mention ppt-MIR166e
(5 sentences)

Sequence

aaugugcuuuuggaguugugaaccuugcugugaggaaugccgcauggaccgaagcuaugugcuccaucuuaacguggugguauugauacuacguuUCGGACCAGGCUUCAUUCCCCucagcgcaguuucaucauggugauggacgg
...((.(.((....((.(((((.(((((((.(.((((((..((.(((.(((((((...(((..(((((.......)))))......)))...))))))).))).))..)))))).).))))).)).))))).))...)).).))..

Structure
aau  g u  ugga  u     c  -     u a      cc  a   a       uau   ----cu     uu 
   gu c uu    gu gugaa cu ugcug g ggaaug  gc ugg ccgaagc   gug      ccauc  a
   || | ||    || ||||| || ||||| | ||||||  || ||| |||||||   |||      |||||  a
   ca g ag    ua uacuu ga gcgac C CCUUAC  CG ACC GGCUuug   cau      ggugg  c
-gg  g u  -ugg  c     u  c     u C      UU  G   A       cau   aguuau     ug 


Annotation confidence Not enough data
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Genome context
Chr14: 8707192-8707337 [+]

Database links

Mature ppt-miR166e

Accession MIMAT0005041
Description Physcomitrella patens ppt-miR166e mature miRNA
Sequence 96 - UCGGACCAGGCUUCAUUCCCC - 116
Evidence experimental
454 [1]

References

  1. PubMed ID: 17601824
    Common functions for diverse small RNAs of land plants
    "Axtell MJ, Snyder JA, Bartel DP"
    "Plant Cell (2007) 19:1750-1769