Stem-loop ppt-MIR166f

Accession

MI0005909

Description

Physcomitrella patens ppt-MIR166f precursor miRNA

Literature search

2 open access papers mention ppt-MIR166f
(5 sentences)

Sequence

263937 reads, 11151.0 reads per million, 10 experiments

augaccagcauaccaguggugcugugcugggAGGAAUGCUGCAUGGUCUGAUgcuuuugcugcgacacaagccUCGGACCAGGCUUCAUUCCCCucagcucagucucauauugacgguucaag
..((((..((.....((((.((((.((((((.((((((..((.((((((((.((((.((......)).)))).)))))))).))..)))))).)))))).)))).))))..))..))))....

Structure

--au    ag  uacca    u    u      A      CU  A        U    u  cu 
    gacc  ca     gugg gcug gcuggg GGAAUG  GC UGGUCUGA gcuu ug  g
    ||||  ||     |||| |||| |||||| ||||||  || |||||||| |||| ||   
    uugg  gu     uacu ugac cgacuC CCUUAC  CG ACCAGGCU cgaa ac  c
gaac    ca  ---ua    c    u      C      UU  G        c    c  ag 

Annotation confidence High

Genome context

Chr06: 13228484-13228606 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ppt-MIR166f

Mature ppt-miR166f-5p

• Accession: MIMAT0053691
• Description: Physcomitrella patens ppt-miR166f-5p mature miRNA
• Sequence: 32 - AGGAAUGCUGCAUGGUCUGAU - 52
• Evidence: experimental ; unknown

Mature ppt-miR166f-3p

• Accession: MIMAT0005042
• Description: Physcomitrella patens ppt-miR166f-3p mature miRNA
• Sequence: 74 - UCGGACCAGGCUUCAUUCCCC - 94
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769