Stem-loop ppt-MIR166g

Accession

MI0005910

Description

Physcomitrella patens ppt-MIR166g precursor miRNA

Literature search

2 open access papers mention ppt-MIR166g
(5 sentences)

Sequence

266873 reads, 11280.0 reads per million, 10 experiments

gugcggagguguuuaggugaaacucugcugcgaGGAAUGCCCCCUGGCCCGAAGgcauguacuucucccucuucgaauggugugagcaucaagcuUCGGACCAGGCUUCAUUCCCCucagcgcaguuacauuucgauauucacguc
..(((..((((((.(((((.((((.(((((.(.((((((...(((((.((((((.(.((...(((.(((.........)).).)))...)).))))))).)))))...)))))).).))))).)))).))))).))))))..))).

Structure

gu   ga      u     a    c     c a      CCC     C      g a  uac   u -  ucu 
  gcg  gguguu aggug aacu ugcug g GGAAUG   CCUGG CCGAAG c ug   uuc c cc   u
  |||  |||||| ||||| |||| ||||| | ||||||   ||||| |||||| | ||   ||| | ||   c
  ugc  uuauag uuuac uuga gcgac C CCUUAC   GGACC GGCUuc g ac   gag g gg   g
-c   ac      c     a    c     u C      UUC     A      - a  uac   u u  uaa 

Annotation confidence High

Genome context

Chr01: 18416230-18416375 [+]

Mature ppt-miR166g-5p

• Accession: MIMAT0053692
• Description: Physcomitrella patens ppt-miR166g-5p mature miRNA
• Sequence: 34 - GGAAUGCCCCCUGGCCCGAAG - 54
• Evidence: experimental ; unknown

Mature ppt-miR166g-3p

• Accession: MIMAT0005043
• Description: Physcomitrella patens ppt-miR166g-3p mature miRNA
• Sequence: 96 - UCGGACCAGGCUUCAUUCCCC - 116
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769