Accession
MI0005911
Description
Physcomitrella patens
ppt-MIR166h precursor miRNA
Literature search
2 open access papers mention ppt-MIR166h
(5 sentences)
(5 sentences)
Sequence
180443
reads,
7615.0
reads per million, 10 experiments
aguucgacaagacuaugagacuuugucaugaGGAAUGACGAGUGGCCCAGAUUCGUuucuggucuagaaauugaauuUCGGACCAGGCUUCAUUCCCCuuggcacgguuccauggagguacuguca
.....((((..((((((.((((.(((((.(.(((((((.(..(((((.(((((((((((((...)))))).))))))).)).)))..).))))))).).))))).)))).)))...)))..)))).
.....((((..((((((.((((.(((((.(.(((((((.(..(((((.(((((((((((((...)))))).))))))).)).)))..).))))))).).))))).)))).)))...)))..)))).
Structure
aguuc ag --- a u u a C AG - C - g
gaca acu aug gacu uguca g GGAAUGA G UGG CC AGAUUCG Uuucug
|||| ||| ||| |||| ||||| | ||||||| | ||| || ||||||| |||||| u
cugu ugg uac uugg acggu C CCUUACU C ACC GG Uuuaagu aaagau
----a ca agg c c u C U GG A C u c
Annotation confidence
High
Do you think this miRNA is real?
Genome context
Chr27: 682285-682410 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from ppt-MIR166h
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ppt-miR166h-5p
| Accession | MIMAT0053693 |
| Description | Physcomitrella patens ppt-miR166h-5p mature miRNA |
| Sequence | 32 - GGAAUGACGAGUGGCCCAGAUUCGU - 56 |
| Evidence |
experimental
unknown |
Mature ppt-miR166h-3p
| Accession | MIMAT0005044 |
| Description | Physcomitrella patens ppt-miR166h-3p mature miRNA |
| Sequence | 78 - UCGGACCAGGCUUCAUUCCCC - 98 |
| Evidence |
experimental
454 [1] |
References
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