Stem-loop ppt-MIR166h

Accession

MI0005911

Description

Physcomitrella patens ppt-MIR166h precursor miRNA

Gene family

MIPF0000004; MIR166

Literature search

2 open access papers mention ppt-MIR166h
(5 sentences)

Sequence

aguucgacaagacuaugagacuuugucaugaggaaugacgaguggcccagauucguuucuggucuagaaauugaauuUCGGACCAGGCUUCAUUCCCCuuggcacgguuccauggagguacuguca
.....((((..((((((.((((.(((((.(.(((((((.(..(((((.(((((((((((((...)))))).))))))).)).)))..).))))))).).))))).)))).)))...)))..)))).

Structure

aguuc    ag   ---   a    u     u a       c ag   -  c       -      g 
     gaca  acu   aug gacu uguca g ggaauga g  ugg cc agauucg uuucug  
     ||||  |||   ||| |||| ||||| | ||||||| |  ||| || ||||||| |||||| u
     cugu  ugg   uac uugg acggu C CCUUACU C  ACC GG Uuuaagu aaagau  
----a    ca   agg   c    c     u C       U GG   A  C       u      c 

Annotation confidence Not enough data

Genome context

Chr27: 682285-682410 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ppt-MIR166h

Mature ppt-miR166h

• Accession: MIMAT0005044
• Description: Physcomitrella patens ppt-miR166h mature miRNA
• Sequence: 78 - UCGGACCAGGCUUCAUUCCCC - 98
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769