Stem-loop ppt-MIR166i

Accession

MI0005912

Description

Physcomitrella patens ppt-MIR166i precursor miRNA

Literature search

2 open access papers mention ppt-MIR166i
(5 sentences)

Sequence

180394 reads, 7613.0 reads per million, 10 experiments

cuuggagauuggaugggacuuugucguggGGAUUGACGCAUGGCACGAAGcuaacauccugagaucaguugcuUCGGACCAGGCUUCAUUCCCCuugccuaaguugcaucauguagugcu
...........((((.(((((.(.((.(((((.(((.((.(((..((((((.((((((....)))..)))))))))..))).)).))).))))).)).).))))).))))..........

Structure

cuuggagauug    g     u u  u     U   C  A   CA      u   --   c 
           gaug gacuu g cg ggGGA UGA GC UGG  CGAAGc aac  auc u
           |||| ||||| | || ||||| ||| || |||  |||||| |||  |||  
           cuac uugaa c gu CCCCU ACU CG ACC  GCUucg uug  uag g
-ucgugaugua    g     u c  u     U   U  G   AG      -   ac   a 

Annotation confidence High

Genome context

Chr16: 2418753-2418872 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppt-MIR166i

Mature ppt-miR166i-5p

• Accession: MIMAT0053694
• Description: Physcomitrella patens ppt-miR166i-5p mature miRNA
• Sequence: 30 - GGAUUGACGCAUGGCACGAAG - 50
• Evidence: experimental ; unknown

Mature ppt-miR166i-3p

• Accession: MIMAT0005045
• Description: Physcomitrella patens ppt-miR166i-3p mature miRNA
• Sequence: 74 - UCGGACCAGGCUUCAUUCCCC - 94
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769