Stem-loop ppt-MIR166j

Accession

MI0005913

Description

Physcomitrella patens ppt-MIR166j precursor miRNA

Literature search

2 open access papers mention ppt-MIR166j
(5 sentences)

Sequence

60878 reads, 2558.0 reads per million, 10 experiments

gaagauguuauauauaugugacauugccgugaGGAAUGACGUGUGGCCCGAAGccauaucuuggguugccuugaugaagcUCCGGACCAGGCUUCAUUCCCcucggcagaguugcaacaagugggaaaggg
................((((((.((((((.(.(((((((.((.(((.(((.(((..((((..((....))..))))..))).))).))).)).))))))).).)))))).))))))...............

Structure

gaagauguuauauaua      a      u a       C  G   C   A   ca    uu  g 
                ugugac uugccg g GGAAUGA GU UGG CCG AGc  uauc  gg u
                |||||| |||||| | ||||||| || ||| ||| |||  ||||  ||  
                acguug gacggc c CCUUACU CG ACC GGC Ucg  guag  cc u
-gggaaagggugaaca      a      u C       U  G   A   C   aa    uu  g 

Annotation confidence High

Genome context

Chr16: 2418918-2419048 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppt-MIR166j

Mature ppt-miR166j-5p

• Accession: MIMAT0053695
• Description: Physcomitrella patens ppt-miR166j-5p mature miRNA
• Sequence: 33 - GGAAUGACGUGUGGCCCGAAG - 53
• Evidence: experimental ; unknown

Mature ppt-miR166j-3p

• Accession: MIMAT0005046
• Description: Physcomitrella patens ppt-miR166j-3p mature miRNA
• Sequence: 81 - UCCGGACCAGGCUUCAUUCCC - 101
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769