Stem-loop ppt-MIR166l

Accession

MI0005915

Description

Physcomitrella patens ppt-MIR166l precursor miRNA

Literature search

2 open access papers mention ppt-MIR166l
(5 sentences)

Sequence

59456 reads, 2505.0 reads per million, 10 experiments

aauuugugaagcugaaugaaacguuuucguggGGAAUGACGUGUGGCCCGUAGccauguaucuuggcaugccagaauuaugcUCCGGACCAGGCUUCAUUCCCcucggcaacguugcaugaugguaauuaugu
...................((((((.(((.(((((((((.((.(((.(((.(((.(((.((.((((....)))).)))))))).))).))).)).))))))))).))).))))))(((((((....)))))))

Structure

aauuugugaagcugaauga      u   u         C  G   C   U   c   u  c    c 
                   aacguu ucg ggGGAAUGA GU UGG CCG AGc aug au uugg a
                   |||||| ||| ||||||||| || ||| ||| ||| ||| || ||||  
                   uugcaa ggc cCCCUUACU CG ACC GGC Ucg uau ua gacc u
-uguauuaaugguaguacg      c   u         U  G   A   C   -   -  a    g 

Annotation confidence High

Genome context

Chr05: 7144693-7144825 [+]

Mature ppt-miR166l-5p

• Accession: MIMAT0053697
• Description: Physcomitrella patens ppt-miR166l-5p mature miRNA
• Sequence: 33 - GGAAUGACGUGUGGCCCGUAG - 53
• Evidence: experimental ; unknown

Mature ppt-miR166l-3p

• Accession: MIMAT0005048
• Description: Physcomitrella patens ppt-miR166l-3p mature miRNA
• Sequence: 83 - UCCGGACCAGGCUUCAUUCCC - 103
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769