miRBase entry: ppt-MIR166m

Stem-loop ppt-MIR166m


Accession
MI0005916
Description
Physcomitrella patens ppt-MIR166m precursor miRNA
Gene family
MIPF0000004; MIR166

Literature search
2 open access papers mention ppt-MIR166m
(5 sentences)

Sequence

gccgagaacagagauuguguagcucagcuguaaggaauguggcauggcucgaugcuguuugagcaugucaaguucagccUCGGACCAGGCAUCAUUCCUUucaucucaguuacacauuugacauccagga
.((..((.((((...(((((((((.((.((.((((((((..((.(((.((((.(((((((((.....)))))..)))).)))).))).))..)))))))).)).)).)))))))))))))...))..)).

Structure
g  ga  --a    gau         c  c  u        ug  a   c    u    --     g 
 cc  ga   caga   uguguagcu ag ug aaggaaug  gc ugg ucga gcug  uuuga c
 ||  ||   ||||   ||||||||| || || ||||||||  || ||| |||| ||||  ||||| a
 gg  cu   guuu   acacauuga uc ac UUCCUUAC  CG ACC GGCU cgac  gaacu u
a  ac  aca    ---         c  u  u        UA  G   A    c    uu     g 


Annotation confidence Not enough data
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Genome context
Chr27: 681930-682059 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from ppt-MIR166m
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppt-miR166m

Accession MIMAT0005049
Description Physcomitrella patens ppt-miR166m mature miRNA
Sequence 80 - UCGGACCAGGCAUCAUUCCUU - 100
Evidence experimental
454 [1]

References

  1. PubMed ID: 17601824
    Common functions for diverse small RNAs of land plants
    "Axtell MJ, Snyder JA, Bartel DP"
    "Plant Cell (2007) 19:1750-1769