Stem-loop ppt-MIR166m

Accession

MI0005916

Description

Physcomitrella patens ppt-MIR166m precursor miRNA

Literature search

2 open access papers mention ppt-MIR166m
(5 sentences)

Sequence

417741 reads, 17907.0 reads per million, 10 experiments

gccgagaacagagauuguguagcucagcuguaaGGAAUGUGGCAUGGCUCGAUGcuguuugagcaugucaaguucagccUCGGACCAGGCAUCAUUCCUUucaucucaguuacacauuugacauccagga
.((..((.((((...(((((((((.((.((.((((((((..((.(((.((((.(((((((((.....)))))..)))).)))).))).))..)))))))).)).)).)))))))))))))...))..)).

Structure

g  ga  --a    gau         c  c  u        UG  A   C    U    --     g 
 cc  ga   caga   uguguagcu ag ug aaGGAAUG  GC UGG UCGA Gcug  uuuga c
 ||  ||   ||||   ||||||||| || || ||||||||  || ||| |||| ||||  ||||| a
 gg  cu   guuu   acacauuga uc ac UUCCUUAC  CG ACC GGCU cgac  gaacu u
a  ac  aca    ---         c  u  u        UA  G   A    c    uu     g 

Annotation confidence High

Genome context

Chr27: 681930-682059 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ppt-MIR166m

Mature ppt-miR166m-5p

• Accession: MIMAT0053698
• Description: Physcomitrella patens ppt-miR166m-5p mature miRNA
• Sequence: 34 - GGAAUGUGGCAUGGCUCGAUG - 54
• Evidence: experimental ; unknown

Mature ppt-miR166m-3p

• Accession: MIMAT0005049
• Description: Physcomitrella patens ppt-miR166m-3p mature miRNA
• Sequence: 80 - UCGGACCAGGCAUCAUUCCUU - 100
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769