Stem-loop ppt-MIR408b

Accession

MI0005917

Description

Physcomitrella patens ppt-MIR408b precursor miRNA

Literature search

1 open access papers mention ppt-MIR408b
(3 sentences)

Sequence

2677 reads, 109.0 reads per million, 9 experiments

guggaagagagagagugguggaagggagggaagCCAGCGUGAGGCAAUGCAUGacaacagcaugcccaggagguccugaggguguuguccucaUGCACUGCCUCUUCCCUGGCUucccuacauagcucgccauucuugugcucu
.....((((.(((((((((((....((((((((((((.(.((((((.(((((((..(((((((.(.((((....)))).).)))))))..))))))).))))))..).))))))))))).)....).))))))))))...))))

Structure

gugga    --a          - aagg -           C -U      A       ca       g c    a 
     agag   gagaguggug g    g agggaagCCAG G  GAGGCA UGCAUGa  acagcau c cagg g
     ||||   |||||||||| |    | ||||||||||| |  |||||| |||||||  ||||||| | ||||  
     ucuc   uucuuaccgc c    c ucccuUCGGUC C  CUCCGU ACGUacu  uguugug g gucc g
-----    gug          u gaua a           C UU      C       cc       g a    u 

Annotation confidence High

Genome context

Chr17: 9264176-9264319 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppt-MIR408b

Mature ppt-miR408b-5p

• Accession: MIMAT0053699
• Description: Physcomitrella patens ppt-miR408b-5p mature miRNA
• Sequence: 34 - CCAGCGUGAGGCAAUGCAUG - 53
• Evidence: experimental ; unknown

Mature ppt-miR408b-3p

• Accession: MIMAT0005050
• Description: Physcomitrella patens ppt-miR408b-3p mature miRNA
• Sequence: 94 - UGCACUGCCUCUUCCCUGGCU - 114
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769