Stem-loop ppt-MIR477d

Accession

MI0005918

Description

Physcomitrella patens ppt-MIR477d precursor miRNA

Literature search

1 open access papers mention ppt-MIR477d
(10 sentences)

Sequence

50609 reads, 2308.0 reads per million, 10 experiments

guugauuucgauuaaacagauugcuuguuccucUCCCUCAAAGGCUUCCAACAACagguacuuggucuuguuuucaccagcaaagcuaaggcccgucccagauGUUAGAAGCCUCUGGGGGUGAcgaagcagcagcuguaugggugguucccau
...............((((.(((((..(((.((.((((((.(((((((.((((.(.((.((..((((((((((((....).))))).)))))).)).)).).)))).))))))).)))))).)).)))..)))))))))(((((.....)))))

Structure

guugauuucgauuaa    a     ug   c  U      A       C    A a  u  uu      -     - a 
               acag uugcu  uuc uc CCCUCA AGGCUUC AACA C gg ac  ggucuu guuuu c c
               |||| |||||  ||| || |||||| ||||||| |||| | || ||  |||||| ||||| |  
               uguc gacga  aag AG GGGGGU UCCGAAG UUGu g cc ug  ccggaa cgaaa g c
uacccuuggugggua    -     cg   c  U      C       A    a a  c  -c      u     c a 

Annotation confidence Medium

Genome context

Chr02: 13760290-13760443 [+]

Mature ppt-miR477d-5p

• Accession: MIMAT0005051
• Description: Physcomitrella patens ppt-miR477d-5p mature miRNA
• Sequence: 34 - UCCCUCAAAGGCUUCCAACAAC - 55
• Evidence: experimental ; 454 [1]

Mature ppt-miR477d-3p

• Accession: MIMAT0053700
• Description: Physcomitrella patens ppt-miR477d-3p mature miRNA
• Sequence: 104 - GUUAGAAGCCUCUGGGGGUGA - 124
• Evidence: experimental ; unknown

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769