Stem-loop ppt-MIR477e

Accession

MI0005919

Description

Physcomitrella patens ppt-MIR477e precursor miRNA

Literature search

1 open access papers mention ppt-MIR477e
(10 sentences)

Sequence

132850 reads, 6045.0 reads per million, 10 experiments

gaugagaagauuccgaaaggcgguugcuuaucuCUCUCCCUCAAAGGCUUCCAAcaucagguguagaagccuugcuAGAAGCCUUUGUGGGAGAGGGggaaacaaacgccuugcauuauugccguuc
................((((((..((....((((((((((.((((((((((...((..((((......))))))...)))))))))).))))))))))....))..))))))(((....))).....

Structure

gaugagaagauuccga      gu  cuua          U          CAA  uc    gu 
                aaggcg  ug    ucuCUCUCCC CAAAGGCUUC   ca  aggu  a
                ||||||  ||    |||||||||| ||||||||||   ||  ||||   
                uuccgc  ac    gGGGAGAGGG GUUUCCGAAG   gu  uccg  g
-cuugccguuauuacg      aa  aaag          U          Auc  --    aa 

Annotation confidence High

Genome context

Chr06: 11394397-11394523 [-]

Mature ppt-miR477e-5p

• Accession: MIMAT0005052
• Description: Physcomitrella patens ppt-miR477e-5p mature miRNA
• Sequence: 34 - CUCUCCCUCAAAGGCUUCCAA - 54
• Evidence: experimental ; 454 [1]

Mature ppt-miR477e-3p

• Accession: MIMAT0053701
• Description: Physcomitrella patens ppt-miR477e-3p mature miRNA
• Sequence: 77 - AGAAGCCUUUGUGGGAGAGGG - 97
• Evidence: experimental ; unknown

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769