Stem-loop ppt-MIR477h

Accession

MI0005920

Description

Physcomitrella patens ppt-MIR477h precursor miRNA

Literature search

1 open access papers mention ppt-MIR477h
(10 sentences)

Sequence

14850 reads, 660.0 reads per million, 10 experiments

ucagagggaguauacucagguguuuguuuuucUCCCUCAAAGGCUUCCAACuacaucagcauucuauuccacuucuggcuuaagaugcagugaauuugcguuguuGUUGGAUGCCUUAGUGGGAGAUguacauaccccugucauugauguguugc
...(((........)))(((.((.(((...((((((.(.(((((.((((((.(((((((((((.((..(((....)))..)).)))))..)))........))).)))))).))))).).))))))...))).)).)))................

Structure

ucagagggaguauacuc   u  u   uuu      U A     U      u   --------   --     c  uu   c 
                 agg gu ugu   ucUCCC C AAGGC UCCAAC aca        uca  gcauu ua  cca u
                 ||| || |||   |||||| | ||||| |||||| |||        |||  ||||| ||  |||  
                 ucc ca aca   AGAGGG G UUCCG AGGUUG ugu        agu  cguag au  ggu u
-cguuguguaguuacug   c  u   ugU      U A     U      u   ugcguuua   ga     a  uc   c 

Annotation confidence High

Genome context

Chr21: 3739666-3739820 [+]

Mature ppt-miR477h-5p

• Accession: MIMAT0005053
• Description: Physcomitrella patens ppt-miR477h-5p mature miRNA
• Sequence: 33 - UCCCUCAAAGGCUUCCAAC - 51
• Evidence: experimental ; 454 [1]

Mature ppt-miR477h-3p

• Accession: MIMAT0053702
• Description: Physcomitrella patens ppt-miR477h-3p mature miRNA
• Sequence: 106 - GUUGGAUGCCUUAGUGGGAGAU - 127
• Evidence: experimental ; unknown

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769