Stem-loop ppt-MIR529a

Accession

MI0005921

Description

Physcomitrella patens ppt-MIR529a precursor miRNA

Literature search

2 open access papers mention ppt-MIR529a
(3 sentences)

Sequence

cuccccuuuucuacauucaagccggguuuCGAAGAGAGAGAGCACAGCCCuggacuuuucucaugugaccgauuuuagcgguacauggugcacugucaucgggcuguucucucucucuucuagacccuacuuggauguguuucuacugc
...........((((((((((..((((((.((((((((((((.(((((((..(((.....(((((((.(((.......))))))))))......)))...))))))).)))))))))))).))))))..))))))))))..........

Structure

cuccccuuuuc          cc      C            C       -ug   -uuuuc       a   au 
           uacauucaag  ggguuu GAAGAGAGAGAG ACAGCCC   gac      ucaugug ccg  u
           ||||||||||  |||||| |||||||||||| |||||||   |||      ||||||| |||  u
           guguagguuc  cccaga cuucucucucuc ugucggg   cug      gguacau ggc  u
-cgucaucuuu          au      u            u       cua   ucacgu       -   ga 

Annotation confidence Low

Genome context

Chr23: 8764781-8764929 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppt-MIR529a

Mature ppt-miR529a

• Accession: MIMAT0005054
• Description: Physcomitrella patens ppt-miR529a mature miRNA
• Sequence: 30 - CGAAGAGAGAGAGCACAGCCC - 50
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769