Stem-loop ppt-MIR529b

Accession

MI0005922

Description

Physcomitrella patens ppt-MIR529b precursor miRNA

Literature search

2 open access papers mention ppt-MIR529b
(3 sentences)

Sequence

uucagccguacuacacccaagccgggauuCGAAGAGAGAGAGCACAGCCCguaacuuucacuaaagaccacuuauugugguucauuggagauuugaugucgggcugugcucucucuuuuccagucccuacucggaugugucgccaucac
....(.((.((.(((.((.((..((((((.(((((((((((((((((((((......((.((((.((((((.....))))))..)))).))........))))))))))))))))))))).))))))..)).)).))))))).).....

Structure

-uuca c  u  u   c  a  cc      C                     --uaacuu  a    -a      u 
     g cg ac aca cc ag  gggauu GAAGAGAGAGAGCACAGCCCg        uc cuaa  gaccac u
     | || || ||| || ||  |||||| |||||||||||||||||||||        || ||||  |||||| a
     c gc ug ugu gg uc  cccuga cuuuucucucucgugucgggc        ag gguu  uuggug u
cacua c  -  -   a  c  au      c                     uguaguuu  a    ac      u 

Annotation confidence Not enough data

Genome context

Chr20: 13887884-13888032 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppt-MIR529b

Mature ppt-miR529b

• Accession: MIMAT0005055
• Description: Physcomitrella patens ppt-miR529b mature miRNA
• Sequence: 30 - CGAAGAGAGAGAGCACAGCCC - 50
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769