Stem-loop ppt-MIR529c

Accession

MI0005923

Description

Physcomitrella patens ppt-MIR529c precursor miRNA

Literature search

2 open access papers mention ppt-MIR529c
(3 sentences)

Sequence

uucagcuuuacuacauccaagccaggauuCGAAGAGAGAGAGCACAGCCCcguuacuuuugcugaaagaauacuuccugugauccauugggaauuugauguugggcugugcucucucuuuuccagucccuaccuggaugugcugccauugc
..((((......(((((((.(...(((((.(((((((((((((((((((((((((...((.((((..((.(((.....))).))..)))).))..)))))..)))))))))))))))))))).)))))...).))))))))))).......

Structure

-----uu    uuuacu       a cca     C                    --     cuu  g    aa  a   u 
       cagc      acaucca g   ggauu GAAGAGAGAGAGCACAGCCC  cguua   uu cuga  ga uac u
       ||||      ||||||| |   ||||| ||||||||||||||||||||  |||||   || ||||  || ||| c
       gucg      uguaggu c   ccuga cuuuucucucucgugucggg  guagu   aa gguu  cu gug c
cguuacc    ------       c auc     c                    uu     -uu  g    ac  a   u 

Annotation confidence Not enough data

Genome context

Chr10: 14598234-14598384 [+]

Mature ppt-miR529c

• Accession: MIMAT0005056
• Description: Physcomitrella patens ppt-miR529c mature miRNA
• Sequence: 30 - CGAAGAGAGAGAGCACAGCCC - 50
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769