Stem-loop ppt-MIR529c

Accession

MI0005923

Description

Physcomitrella patens ppt-MIR529c precursor miRNA

Literature search

2 open access papers mention ppt-MIR529c
(3 sentences)

Sequence

263239 reads, 11779.0 reads per million, 10 experiments

uucagcuuuacuacauccaagccaggauuCGAAGAGAGAGAGCACAGCCCcguuacuuuugcugaaagaauacuuccugugauccauugggaauuugauguuggGCUGUGCUCUCUCUUUUCCAGUCccuaccuggaugugcugccauugc
..((((......(((((((.(...(((((.(((((((((((((((((((((((((...((.((((..((.(((.....))).))..)))).))..)))))..)))))))))))))))))))).)))))...).))))))))))).......

Structure

-----uu    uuuacu       a cca     C                    --     cuu  g    aa  a   u 
       cagc      acaucca g   ggauu GAAGAGAGAGAGCACAGCCC  cguua   uu cuga  ga uac u
       ||||      ||||||| |   ||||| ||||||||||||||||||||  |||||   || ||||  || ||| c
       gucg      uguaggu c   cCUGA CUUUUCUCUCUCGUGUCGgg  guagu   aa gguu  cu gug c
cguuacc    ------       c auc     C                    uu     -uu  g    ac  a   u 

Annotation confidence High

Genome context

Chr10: 14598234-14598384 [+]

Mature ppt-miR529c-5p

• Accession: MIMAT0005056
• Description: Physcomitrella patens ppt-miR529c-5p mature miRNA
• Sequence: 30 - CGAAGAGAGAGAGCACAGCCC - 50
• Evidence: experimental ; 454 [1]

Mature ppt-miR529c-3p

• Accession: MIMAT0053704
• Description: Physcomitrella patens ppt-miR529c-3p mature miRNA
• Sequence: 105 - GCUGUGCUCUCUCUUUUCCAGUC - 127
• Evidence: experimental ; unknown

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769