Stem-loop ppt-MIR529d

Accession

MI0005924

Description

Physcomitrella patens ppt-MIR529d precursor miRNA

Literature search

2 open access papers mention ppt-MIR529d
(3 sentences)

Sequence

107834 reads, 4611.0 reads per million, 10 experiments

cuagcuucuccacaauuucucacccucguugggaucAGAAGAGAGAGAGCACAGCCCgauguccaauguucaggucgaauggGCUGUGCUCUCUCUCUUCUUGcuccaacuugggugcuacacgcaucuaggguac
.....................((((..((((((...((((((((((((((((((((((.((.((........)).))..))))))))))))))))))))))...)))))).(((((((.....)))))))))))..

Structure

cuagcuucuccacaauuucuc    ------------------uc      auc                      -a  u  aau 
                     accc                    guuggg   AGAAGAGAGAGAGCACAGCCCg  ug cc   g
                     ||||                    ||||||   ||||||||||||||||||||||  || ||    
                     uggg                    caaccu   UCUUCUCUCUCUCGUGUCGggu  gc gg   u
-------------------ca    aucuacgcacaucguggguu      cGU                      aa  u  acu 

Annotation confidence High

Genome context

Chr20: 13887655-13887790 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppt-MIR529d

Mature ppt-miR529d-5p

• Accession: MIMAT0005057
• Description: Physcomitrella patens ppt-miR529d-5p mature miRNA
• Sequence: 37 - AGAAGAGAGAGAGCACAGCCC - 57
• Evidence: experimental ; 454 [1]

Mature ppt-miR529d-3p

• Accession: MIMAT0053705
• Description: Physcomitrella patens ppt-miR529d-3p mature miRNA
• Sequence: 83 - GCUGUGCUCUCUCUCUUCUUG - 103
• Evidence: experimental ; unknown

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769