Stem-loop ppt-MIR529e

Accession

MI0005925

Description

Physcomitrella patens ppt-MIR529e precursor miRNA

Literature search

2 open access papers mention ppt-MIR529e
(3 sentences)

Sequence

7673 reads, 364.0 reads per million, 10 experiments

ucagcaauuuacucacucaugcugggaucAGAAGAGAGAGAGUACAGCCCaagagcaaccgcuuaguuggaauggGCUGUGCUCUCUCUCUUCUGGUuccaaccugagugcaugucgguugu
...((((((.((.((((((.(.(((((((((((((((((((((((((((((....((((......))))...))))))))))))))))))))))))))))).).))))))...)).))))))

Structure

uca      u  --u      u c                             agag    cg 
   gcaauu ac   cacuca g ugggaucAGAAGAGAGAGAGUACAGCCCa    caac  c
   |||||| ||   |||||| | |||||||||||||||||||||||||||||    ||||   
   uguugg ug   gugagu c accuUGGUCUUCUCUCUCUCGUGUCGggu    guug  u
---      c  uac      c a                             -aag    au 

Annotation confidence High

Genome context

Chr23: 8765009-8765130 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppt-MIR529e

Mature ppt-miR529e-5p

• Accession: MIMAT0005058
• Description: Physcomitrella patens ppt-miR529e-5p mature miRNA
• Sequence: 30 - AGAAGAGAGAGAGUACAGCCC - 50
• Evidence: experimental ; 454 [1]

Mature ppt-miR529e-3p

• Accession: MIMAT0053706
• Description: Physcomitrella patens ppt-miR529e-3p mature miRNA
• Sequence: 76 - GCUGUGCUCUCUCUCUUCUGGU - 97
• Evidence: experimental ; unknown

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769