Stem-loop ppt-MIR529f

Accession

MI0005926

Description

Physcomitrella patens ppt-MIR529f precursor miRNA

Literature search

2 open access papers mention ppt-MIR529f
(3 sentences)

Sequence

7780 reads, 367.0 reads per million, 10 experiments

ugcacaauuuucucacucaugcugggaucAGAAGAGAGAGAGUACAGCCCaacggccgauguucaguuggaacggGCUGUGCUCUCUCUCUUCUUGUuccaaccugggugcauuuccguucu
.............((((((.(.((((((.(((((((((((((((((((((.....(((((.....)))))...))))))))))))))))))))).)))))).).))))))............

Structure

ugcacaauuuucu      u c      c                     aacgg     g 
             cacuca g ugggau AGAAGAGAGAGAGUACAGCCC     ccgau u
             |||||| | |||||| |||||||||||||||||||||     ||||| u
             gugggu c accuUG UCUUCUCUCUCUCGUGUCGgg     gguug c
-ucuugccuuuac      c a      U                     --caa     a 

Annotation confidence High

Genome context

Chr24: 1643882-1644003 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppt-MIR529f

Mature ppt-miR529f-5p

• Accession: MIMAT0005059
• Description: Physcomitrella patens ppt-miR529f-5p mature miRNA
• Sequence: 30 - AGAAGAGAGAGAGUACAGCCC - 50
• Evidence: experimental ; 454 [1]

Mature ppt-miR529f-3p

• Accession: MIMAT0053707
• Description: Physcomitrella patens ppt-miR529f-3p mature miRNA
• Sequence: 76 - GCUGUGCUCUCUCUCUUCUUGU - 97
• Evidence: experimental ; unknown

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769