Accession
MI0005928
Description
Physcomitrella patens
ppt-MIR533c precursor miRNA
Sequence
65390
reads,
2664.0
reads per million, 10 experiments
aguguuugaaagaggguuagcgacauugaGAGCUGUUCAGACUAUGAGAAaguguguggaagaggauuuggugacuugaacuggugcuucaaggaaagccuaaaguccaaguuccacucuugcuCUCACAGUCUGCACAGCUCUCuguaucucuuccccuaguauaugucu
............((((..((.((.((.(((((((((.((((((.(((((..(.(.((((((..(((((((((..(((((((....).))))))....)))..))))))...)))))).).)..))))).)))))).))))))))).)).)).))..))))...........
............((((..((.((.((.(((((((((.((((((.(((((..(.(.((((((..(((((((((..(((((((....).))))))....)))..))))))...)))))).).)..))))).)))))).))))))))).)).)).))..))))...........
Structure
aguguuugaaag uu c c u U A Aa u u -ga -- --ga - u
aggg ag ga au gaGAGCUGU CAGACU UGAGA g g guggaa ggauuu ggu cuugaa c g
|||| || || || ||||||||| |||||| ||||| | | |||||| |||||| ||| |||||| |
uccc uc cu ug CUCUCGACA GUCUGA ACUCu u c caccuu ccugaa ccg gaacuu g g
-ucuguauauga cu u a u C C cg u u gaa au aaag c u
Annotation confidence
High
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Genome context
Chr22: 10965809-10965979 [-]
Database links
Mature ppt-miR533c-5p
| Accession | MIMAT0053708 |
| Description | Physcomitrella patens ppt-miR533c-5p mature miRNA |
| Sequence | 30 - GAGCUGUUCAGACUAUGAGAA - 50 |
| Evidence |
experimental
unknown |
Mature ppt-miR533c-3p
| Accession | MIMAT0005061 |
| Description | Physcomitrella patens ppt-miR533c-3p mature miRNA |
| Sequence | 125 - CUCACAGUCUGCACAGCUCUC - 145 |
| Evidence |
experimental
454 [1] |
References
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