Stem-loop ppt-MIR533e

Accession

MI0005930

Description

Physcomitrella patens ppt-MIR533e precursor miRNA

Sequence

gagugguugugcaugacgaggcagcgacagagagagcuggccagacugugagggauggagcgaauuuagcuugugccuuguguggcucacucgugcagcuccCUCACAGUCUGCAUGGCUCUCcgugucucuuccucuuuucggccacguugg
..(((((((.....((.((((.((.((((..((((((((..((((((((((((((.(..(((.....((..((.(((......))).))))..)))..)))))))))))))))..))))))))..)))).)).))))))..))))))).....

Structure

---ga       ugcau  c    c  c    ga        gc              u ga   aauuu  cu  u   uu 
     gugguug     ga gagg ag gaca  gagagcug  cagacugugaggga g  gcg     ag  ug gcc  g
     |||||||     || |||| || ||||  ||||||||  |||||||||||||| |  |||     ||  || |||   
     caccggc     uu cucc uc cugu  CUCUCGGU  GUCUGACACUCccu c  cgu     uc  ac cgg  u
gguug       ---uu  -    u  u    gc        AC              - ga   ---gc  --  u   ug 

Annotation confidence Not enough data

Genome context

Chr15: 13275772-13275924 [-]

Mature ppt-miR533e

• Accession: MIMAT0005063
• Description: Physcomitrella patens ppt-miR533e mature miRNA
• Sequence: 103 - CUCACAGUCUGCAUGGCUCUC - 123
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769