Accession
MI0005930
Description
Physcomitrella patens
ppt-MIR533e precursor miRNA
Sequence
3068
reads,
130.0
reads per million, 10 experiments
gagugguugugcaugacgaggcagcgacagagaGAGCUGGCCAGACUGUGAGGGauggagcgaauuuagcuugugccuuguguggcucacucgugcagcuccCUCACAGUCUGCAUGGCUCUCcgugucucuuccucuuuucggccacguugg
..(((((((.....((.((((.((.((((..((((((((..((((((((((((((.(..(((.....((..((.(((......))).))))..)))..)))))))))))))))..))))))))..)))).)).))))))..))))))).....
..(((((((.....((.((((.((.((((..((((((((..((((((((((((((.(..(((.....((..((.(((......))).))))..)))..)))))))))))))))..))))))))..)))).)).))))))..))))))).....
Structure
---ga ugcau c c c ga GC u ga aauuu cu u uu
gugguug ga gagg ag gaca gaGAGCUG CAGACUGUGAGGGa g gcg ag ug gcc g
||||||| || |||| || |||| |||||||| |||||||||||||| | ||| || || |||
caccggc uu cucc uc cugu CUCUCGGU GUCUGACACUCccu c cgu uc ac cgg u
gguug ---uu - u u gc AC - ga ---gc -- u ug
Annotation confidence
High
Do you think this miRNA is real?
Genome context
Chr15: 13275772-13275924 [-]
Database links
Mature ppt-miR533e-5p
| Accession | MIMAT0053710 |
| Description | Physcomitrella patens ppt-miR533e-5p mature miRNA |
| Sequence | 34 - GAGCUGGCCAGACUGUGAGGG - 54 |
| Evidence |
experimental
unknown |
Mature ppt-miR533e-3p
| Accession | MIMAT0005063 |
| Description | Physcomitrella patens ppt-miR533e-3p mature miRNA |
| Sequence | 103 - CUCACAGUCUGCAUGGCUCUC - 123 |
| Evidence |
experimental
454 [1] |
References
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