Stem-loop ppt-MIR536d

Accession

MI0005932

Description

Physcomitrella patens ppt-MIR536d precursor miRNA

Literature search

2 open access papers mention ppt-MIR536d
(16 sentences)

Sequence

agggugcauuccaagugccgucccuuggaagccgcaguuuggcacgaagcccuuucuccugccgcuacuguuuuguuagucagguuugcagcgugucucgauauaguggugugcuuccguugcuauccuuucccuccagguaggaauucuguggcaaacuagugguugguucgcuuaucaaguugcaguccuucauaccuugauuuugaauuacugcagucacacccuucuugucggcaguuuuuuuuuuuuuuguguguccuaccgacugcacugacugcagaaagucgaagcaauggaggugucguugcauuuuccucauaguuuugcuagcuucuacuucuggguugauguugaacccacuccacccacuuguagcggaaagauguuagaauUUCGUGCCAAGCUGUGUGCAACcaagggguuuguuacuucaaauccac
..(((((.......)))))..(((((((..(((((((((((((((((((..((..(..(((((((((((((.(((..((.((.(((...))).)).))))).))))))))).))(((((((((..((((..((.....)).)))).....((((.......((((..((((((..((((.(((.((((((...(((((...((....(((..(((((.(.((.........)).).)))))..)))...))...))))).......)))))))))((((.(((((.((.(((((...((((((((....))))))))....((((...))))))))).))))))))))))))).))))))....))))))))..)))))))))))..)..))..))))))))))))))))).))..)))))))(((((......)))))....

Structure

agggugcauuccaagugccgu       aa  -                 cc  uu uc  gccgcuacuguuuuguuagucagguuugcagcgugucucgauauaguggugugc         uauccuuucccuccagguaggaauucu    caaacua    --uu      cu    -------------------------------------------------------------------------a   u      ----cuu     cuu  uuuu   uu     a u  cac 
                     cccuugg  gc cgcaguuuggcacgaag  cu  c  cu                                                      uuccguugc                           gugg       gugg    gguucg  uauc                                                                          agu gcaguc       cauac   ga    gaa  acugc g ca   c
                     |||||||  || |||||||||||||||||  ||  |  ||                                                      |||||||||                           ||||       ||||    ||||||  ||||                                                                          ||| ||||||       |||||   ||    |||  ||||| | ||   c
                     gggaacC  CG GUGUCGAACCGUGCUUu  ga  g  ga                                                      aaggcgaug                           cacc       cacc    ccaagu  guag                                                                          uca cgucag       gugug   uu    uuu  ugacg c gu   u
-caccuaaacuucauuguuug       AA  U                 aa  uu ua  ------------------------------------------------------         -------------------------uu    -------    ucac      -u    uugggucuucaucuucgaucguuuugauacuccuuuuacguugcuguggagguaacgaagcugaaagacgucag   -      ccauccu     uuu  -uuu   uu     g u  ucu 

Annotation confidence Not enough data

Genome context

Chr24: 5312887-5313329 [+]

Mature ppt-miR536d

• Accession: MIMAT0005064
• Description: Physcomitrella patens ppt-miR536d mature miRNA
• Sequence: 396 - UUCGUGCCAAGCUGUGUGCAAC - 417
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769