Accession
MI0005933
Description
Physcomitrella patens
ppt-MIR536e precursor miRNA
Literature search
2 open access papers mention ppt-MIR536e
(16 sentences)
(16 sentences)
Sequence
2274584
reads,
97790.0
reads per million, 10 experiments
uguguggauccuaagugucuccccuuggaAGCCGCAGUUUGGCAUGAAGCacuuauuccuuugcgcauccauuuugugacugcuuguauugagucgaauccaauuccuugccuucuacuuccuuccaaucuagaucacuccugguuuuucacauuguuugguuguugggggucauauuguuuguauaccuuuuuucgcacgaaaucuucaauuugaaagacgcuguuggaaacucuaauuucgaauuucugcagccacacccaauaguuugaggucuugucgguaucuuccuuugcgcgccuacuucagugacugcagaaagucacugcagucacuaccggggacgaacauacuagcacuguuaaucucacuauacucgucaaucuucaguuguccaugcacgauuucucccuaaaauuauugaggggauaucagaguUUCGUGCCAAGCUGUGUGCAACcaag
.....(((..(.....)..))).(((((..((((((((((((((((((((.((((((((((((((((........(((((((.(((....((((.(((..(((....)))..))).)))).....)))..))).)))).....((((((((.((((((((((....((((((.((((.....))))))))))....)).)))).....)))).))))))))(((((.(((((.((.......)).))))))))))...((((((....))).)))......((......))..))))).........(((((((((((.......)))))))))))...((((((((.............................))))).......((((((......))))))...)))..........)))))))))..)).)))))))))))))))))).))..)))))
.....(((..(.....)..))).(((((..((((((((((((((((((((.((((((((((((((((........(((((((.(((....((((.(((..(((....)))..))).)))).....)))..))).)))).....((((((((.((((((((((....((((((.((((.....))))))))))....)).)))).....)))).))))))))(((((.(((((.((.......)).))))))))))...((((((....))).)))......((......))..))))).........(((((((((((.......)))))))))))...((((((((.............................))))).......((((((......))))))...)))..........)))))))))..)).)))))))))))))))))).))..)))))
Structure
uguguggauccuaagugucuccc aA - a -- ---------------------------------------------------------------------------------------------------------------------------- uccauuuugugacugcuuguauugagucgaauccaauuccuugccuucuacuuccuuccaaucuagaucacuccug c ----- - uguu c u
cuugg GC CGCAGUUUGGCAUGAAGC cu uauuccuuu gcgca guuuuuca auug uuug gu gggggu auau g
||||| || |||||||||||||||||| || ||||||||| ||||| |||||||| |||| |||| || |||||| |||| u
gaacC CG GUGUCGAACCGUGCUUug ga auaggggag cgcgu cagaaagu uaac aagc cg uuucca uaug u
----------------------- AA U a cu uuauuaaaaucccucuuuagcacguaccuguugacuucuaacugcucauaucacucuaauugucacgaucauacaagcaggggccaucacugacgucacugaaagacgucagugacuucauccg ----uuccuucuauggcuguucuggaguuugauaacccacaccgacgucuuuaagcuuuaaucucaaagguugucg u uucua a cuuu - u
Annotation confidence
High
Do you think this miRNA is real?
Genome context
Chr23: 1247525-1247988 [+]
Database links
Mature ppt-miR536e-5p
| Accession | MIMAT0053712 |
| Description | Physcomitrella patens ppt-miR536e-5p mature miRNA |
| Sequence | 30 - AGCCGCAGUUUGGCAUGAAGC - 50 |
| Evidence |
experimental
unknown |
Mature ppt-miR536e-3p
| Accession | MIMAT0005065 |
| Description | Physcomitrella patens ppt-miR536e-3p mature miRNA |
| Sequence | 439 - UUCGUGCCAAGCUGUGUGCAAC - 460 |
| Evidence |
experimental
454 [1] |
References
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