miRBase entry: ppt-MIR536f

Stem-loop ppt-MIR536f


Accession
MI0005934
Description
Physcomitrella patens ppt-MIR536f precursor miRNA

Literature search
2 open access papers mention ppt-MIR536f
(16 sentences)

Sequence

uucgacgucguguuaagugugauuccuuagcagccauaguuugguaugaagcucucucugaacaucagauaucggucgguagaguugagguuuguucacaugaccuuagcucuguuuuccgagcgcUUCGUGCCAAGCUGUGUGCAucuaagggaaucucacuucugaacagaaag
.......((.(((((((((.((((((((((..((((((((((((((((((((.((((((((...)))))....((..(((((((((((((((.........)))))))))))))))..))))).)))))))))))))))))).))..)))).)))))).)))))...))))))...

Structure
uucgacg  g    ---     u      -    ca  -                  u   ucugaacaucagauauc  uc               ugu 
       uc uguu   aagug gauucc uuag  gc cauaguuugguaugaagc cuc                 gg  gguagaguugagguu   u
       || ||||   ||||| |||||| ||||  || |||||||||||||||||| |||                 ||  |||||||||||||||   c
       ag acaa   uucac cuaagg aauc  CG GUGUCGAACCGUGCUUcg gag                 cc  uugucucgauuccag   a
----gaa  -    guc     u      g    uA  U                  c   -----------------  uu               uac 


Annotation confidence Not enough data
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Genome context
Chr12: 5496564-5496739 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ppt-MIR536f
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppt-miR536f

Accession MIMAT0005066
Description Physcomitrella patens ppt-miR536f mature miRNA
Sequence 127 - UUCGUGCCAAGCUGUGUGCA - 146
Evidence experimental
454 [1]

References

  1. PubMed ID: 17601824
    Common functions for diverse small RNAs of land plants
    "Axtell MJ, Snyder JA, Bartel DP"
    "Plant Cell (2007) 19:1750-1769