Stem-loop ppt-MIR536f

Accession

MI0005934

Description

Physcomitrella patens ppt-MIR536f precursor miRNA

Literature search

2 open access papers mention ppt-MIR536f
(16 sentences)

Sequence

uucgacgucguguuaagugugauuccuuagcagccauaguuugguaugaagcucucucugaacaucagauaucggucgguagaguugagguuuguucacaugaccuuagcucuguuuuccgagcgcUUCGUGCCAAGCUGUGUGCAucuaagggaaucucacuucugaacagaaag
.......((.(((((((((.((((((((((..((((((((((((((((((((.((((((((...)))))....((..(((((((((((((((.........)))))))))))))))..))))).)))))))))))))))))).))..)))).)))))).)))))...))))))...

Structure

uucgacg  g    ---     u      -    ca  -                  u   ucugaacaucagauauc  uc               ugu 
       uc uguu   aagug gauucc uuag  gc cauaguuugguaugaagc cuc                 gg  gguagaguugagguu   u
       || ||||   ||||| |||||| ||||  || |||||||||||||||||| |||                 ||  |||||||||||||||   c
       ag acaa   uucac cuaagg aauc  CG GUGUCGAACCGUGCUUcg gag                 cc  uugucucgauuccag   a
----gaa  -    guc     u      g    uA  U                  c   -----------------  uu               uac 

Annotation confidence Not enough data

Genome context

Chr12: 5496564-5496739 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ppt-MIR536f

Mature ppt-miR536f

• Accession: MIMAT0005066
• Description: Physcomitrella patens ppt-miR536f mature miRNA
• Sequence: 127 - UUCGUGCCAAGCUGUGUGCA - 146
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769