Stem-loop ppt-MIR902d

Accession

MI0005938

Description

Physcomitrella patens ppt-MIR902d precursor miRNA

Literature search

2 open access papers mention ppt-MIR902d
(2 sentences)

Sequence

aaggauccucccauuugcgcccacuggguUAUGAUGCAGAUUCUUCAUCUacuucacuggagcuuccacaaguggugcaccagAUGAAGGUCUGCAUCGUAGCcgagaggaagcaaauucuucuggacc
..((.(((....((((((..((.((.(((((((((((((((.((((((((....((((...((((....))))))))....))))))))))))))))))))))).)).))..))))))......)))))

Structure

aa  a   --uccc      gc  a  g               U        acuu    gga    c 
  gg ucc      auuugc  cc cu gguUAUGAUGCAGAU CUUCAUCU    cacu   gcuu c
  || |||      ||||||  || || ||||||||||||||| ||||||||    ||||   ||||  
  cc agg      uaaacg  gg ga cCGAUGCUACGUCUG GAAGUAga    gugg   ugaa a
--  -   ucuucu      aa  a  g               -        ccac    ---    c 

Annotation confidence Not enough data

Genome context

Chr01: 4328118-4328246 [-]

Mature ppt-miR902d-5p

• Accession: MIMAT0005071
• Description: Physcomitrella patens ppt-miR902d-5p mature miRNA
• Sequence: 30 - UAUGAUGCAGAUUCUUCAUCU - 50
• Evidence: experimental ; 454 [1]

Mature ppt-miR902d-3p

• Accession: MIMAT0005072
• Description: Physcomitrella patens ppt-miR902d-3p mature miRNA
• Sequence: 84 - AUGAAGGUCUGCAUCGUAGC - 103
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769