Stem-loop ppt-MIR902e

Accession

MI0005939

Description

Physcomitrella patens ppt-MIR902e precursor miRNA

Literature search

2 open access papers mention ppt-MIR902e
(2 sentences)

Sequence

gacagcgugccgucucauuuccuuccgcuagucUAUGAUGCAGAUUCUUCAUCUguuucgugugaugcuugugcacgagucagACGAAGGUCUGCAUCAUAGUcaagaggaagcaaauaugaaauucaggagc
.....(.((...((..((((.(((((.((.(.(((((((((((((.((((.((((.((((((((.......)))))))).)))).))))))))))))))))).).)).))))).))))..))....)).)...

Structure

gacag g  -ccg  uc    c     g  a u             U    A    u        au 
     c ug    uc  auuu cuucc cu g cUAUGAUGCAGAU CUUC UCUg uucgugug  g
     | ||    ||  |||| ||||| || | ||||||||||||| |||| |||| ||||||||  c
     g ac    ag  uaaa gaagg ga c GAUACUACGUCUG GAAG Agac gagcacgu  u
--cga g  uuaa  ua    c     a  a U             -    C    u        gu 

Annotation confidence Not enough data

Genome context

Chr11: 9177888-9178020 [+]

Mature ppt-miR902e-5p

• Accession: MIMAT0005073
• Description: Physcomitrella patens ppt-miR902e-5p mature miRNA
• Sequence: 34 - UAUGAUGCAGAUUCUUCAUCU - 54
• Evidence: experimental ; 454 [1]

Mature ppt-miR902e-3p

• Accession: MIMAT0005074
• Description: Physcomitrella patens ppt-miR902e-3p mature miRNA
• Sequence: 84 - ACGAAGGUCUGCAUCAUAGU - 103
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769