Stem-loop ppt-MIR902g

Accession

MI0005941

Description

Physcomitrella patens ppt-MIR902g precursor miRNA

Literature search

2 open access papers mention ppt-MIR902g
(2 sentences)

Sequence

gguagcagguuuguucauuuucuuccgcuagucUAUGAUGCAGAUUCUUCAUCUguuuagcugaaucugcgucaguguuucaguguuacagACGAAGGUCUGCAUCAUAGUcaagaggaaugaaaauacauuauagauuau
.......(((((((..((((((((((.((.(.(((((((((((((.((((.(((((...((((((.(.((....))).))))))...))))).))))))))))))))))).).)).)))).)))))).....)))))))..

Structure

gguagca       ---uc      -    g  a u             U    A     uua      u u  g 
       gguuugu     auuuuc uucc cu g cUAUGAUGCAGAU CUUC UCUgu   gcugaa c gc u
       |||||||     |||||| |||| || | ||||||||||||| |||| |||||   |||||| | ||  
       uuagaua     uaaaag aagg ga c GAUACUACGUCUG GAAG Agaca   ugacuu g ug c
-----ua       uuaca      u    a  a U             -    C     uug      u -  a 

Annotation confidence Not enough data

Genome context

Chr18: 1694902-1695042 [-]

Mature ppt-miR902g-5p

• Accession: MIMAT0005077
• Description: Physcomitrella patens ppt-miR902g-5p mature miRNA
• Sequence: 34 - UAUGAUGCAGAUUCUUCAUCU - 54
• Evidence: experimental ; 454 [1]

Mature ppt-miR902g-3p

• Accession: MIMAT0005078
• Description: Physcomitrella patens ppt-miR902g-3p mature miRNA
• Sequence: 92 - ACGAAGGUCUGCAUCAUAGU - 111
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769