Stem-loop ppt-MIR902h

Accession

MI0005942

Description

Physcomitrella patens ppt-MIR902h precursor miRNA

Literature search

2 open access papers mention ppt-MIR902h
(2 sentences)

Sequence

4605 reads, 202.0 reads per million, 10 experiments

ccugcacaacccacaaaaucguguugaucuagaUUAUGAUGUAGAUUCUUCAUCUggaauugaauuucgauuuaagaAGAAGGGUCUACAUCAUAAACUggaugauuacgauuguuggauaacagcag
.((((.....(((...(((((((.(.((((((.((((((((((((((((((.(((.(((((((...))))))).))).)))))))))))))))))).)))))).).)))))))..)))......))))

Structure

c    -acaac   caa       u g      a                  A   g       a 
 cugc      cca   aaucgug u aucuag UUAUGAUGUAGAUUCUUC UCU gaauuga  
 ||||      |||   ||||||| | |||||| |||||||||||||||||| ||| ||||||| u
 gacg      ggu   uuagcau a uaggUC AAUACUACAUCUGGGAAG aga uuuagcu  
-    acaaua   -ug       u g      A                  A   a       u 

Annotation confidence High

Genome context

Chr18: 6122671-6122798 [-]

Mature ppt-miR902h-5p

• Accession: MIMAT0005079
• Description: Physcomitrella patens ppt-miR902h-5p mature miRNA
• Sequence: 34 - UUAUGAUGUAGAUUCUUCAUCU - 55
• Evidence: experimental ; 454 [1]

Mature ppt-miR902h-3p

• Accession: MIMAT0005080
• Description: Physcomitrella patens ppt-miR902h-3p mature miRNA
• Sequence: 78 - AGAAGGGUCUACAUCAUAAACU - 99
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769