Stem-loop ppt-MIR902i

Accession

MI0005943

Description

Physcomitrella patens ppt-MIR902i precursor miRNA

Literature search

2 open access papers mention ppt-MIR902i
(2 sentences)

Sequence

1949 reads, 86.0 reads per million, 10 experiments

gacaaccugcagaguuguguugaucuggaUUAUGAUGUAGAUUCUUCAUCUaugagugaagcucaaucaaagaUGGAGGAUCUGCAUCGUAAACUggauuaucacgacuaucgaacaacg
............(((((((.((((((((.((((((((((((((((((((((.(((.(((...))).))).)))))))))))))))))))))).)))))))).)))))))...........

Structure

gacaaccugcag       u        a                      a   g   a 
            aguugug ugaucugg UUAUGAUGUAGAUUCUUCAUCU uga uga  
            ||||||| |||||||| |||||||||||||||||||||| ||| ||| g
            ucagcac auuaggUC AAUGCUACGUCUAGGAGGUaga acu acu  
-gcaacaagcua       u        A                      a   a   c 

Annotation confidence High

Genome context

Chr21: 5057311-5057430 [+]

Mature ppt-miR902i-5p

• Accession: MIMAT0005081
• Description: Physcomitrella patens ppt-miR902i-5p mature miRNA
• Sequence: 30 - UUAUGAUGUAGAUUCUUCAUCU - 51
• Evidence: experimental ; 454 [1]

Mature ppt-miR902i-3p

• Accession: MIMAT0005082
• Description: Physcomitrella patens ppt-miR902i-3p mature miRNA
• Sequence: 74 - UGGAGGAUCUGCAUCGUAAACU - 95
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769