Stem-loop ppt-MIR902j

Accession

MI0005944

Description

Physcomitrella patens ppt-MIR902j precursor miRNA

Literature search

2 open access papers mention ppt-MIR902j
(2 sentences)

Sequence

gcggguuaaaguugaacagguugccucucucguAUAUGUUGCAGAUUCUUCAUUugucuagcugaucaacuauaguauugauuugucuagcugaucaacuauaguauugacugucaugcaaaAGAAGGAUCUGCAACAUAGACaagaauaggugaucgauuuuuauacacuca
..((((.......(((..((((((((.(((.((.(((((((((((((((((.(((((...((.(.(((((((((((..(((((.((...)).)))))))))))))..)))).))...))))).))))))))))))))))).)).)))..))))))))..)))......)))).

Structure

gc    uaaaguu   ca        -c   c  A                 A     cua  u a   --        au     u  c 
  gggu       gaa  gguugccu  ucu gu UAUGUUGCAGAUUCUUC UUugu   gc g uca  acuauagu  ugauu gu  
  ||||       |||  ||||||||  ||| || ||||||||||||||||| |||||   || | |||  ||||||||  ||||| || u
  cuca       uuu  cuagugga  aga CA AUACAACGUCUAGGAAG aaacg   ug c agu  ugauauca  acuag cg  
-a    -cauauu   ag        ua   a  G                 A     uac  u -   ua        --     u  a 

Annotation confidence Not enough data

Genome context

Chr13: 7045952-7046124 [-]

Mature ppt-miR902j-5p

• Accession: MIMAT0005083
• Description: Physcomitrella patens ppt-miR902j-5p mature miRNA
• Sequence: 34 - AUAUGUUGCAGAUUCUUCAUU - 54
• Evidence: experimental ; 454 [1]

Mature ppt-miR902j-3p

• Accession: MIMAT0005084
• Description: Physcomitrella patens ppt-miR902j-3p mature miRNA
• Sequence: 123 - AGAAGGAUCUGCAACAUAGAC - 143
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769