Stem-loop ppt-MIR902k

Accession

MI0005945

Description

Physcomitrella patens ppt-MIR902k precursor miRNA

Literature search

2 open access papers mention ppt-MIR902k
(2 sentences)

Sequence

guugauuuugcugcauagauuaucuuucuauucUAUGUUGCAGAUUCUUCAUUUgccgcucugcugaaugaucauauugcgggugaagcaaACGAAGGAUCUGCAAUAUAAAccagaaaagguaaucguauuuuggccaaua
.........((((.(((((((((((((((....(((((((((((((((((.((((((((.((((..............)))))))..))))).)))))))))))))))))....)).)))))))))).)))..)))).....

Structure

guugauuuu    -c   -          -  auuc                 A     --   u    ugaaug 
         gcug  aua gauuaucuuu cu    UAUGUUGCAGAUUCUUC UUUgc  cgc cugc      a
         ||||  ||| |||||||||| ||    ||||||||||||||||| |||||  ||| ||||       
         cggu  uau cuaauggaaa ga    AUAUAACGUCUAGGAAG Aaacg  gug ggcg      u
----auaac    uu   g          a  ccAA                 C     aa   -    uuauac 

Annotation confidence Not enough data

Genome context

Chr03: 7481527-7481668 [-]

Mature ppt-miR902k-5p

• Accession: MIMAT0005085
• Description: Physcomitrella patens ppt-miR902k-5p mature miRNA
• Sequence: 34 - UAUGUUGCAGAUUCUUCAUUU - 54
• Evidence: experimental ; 454 [1]

Mature ppt-miR902k-3p

• Accession: MIMAT0005086
• Description: Physcomitrella patens ppt-miR902k-3p mature miRNA
• Sequence: 92 - ACGAAGGAUCUGCAAUAUAAA - 112
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769