Stem-loop ppt-MIR902l

Accession

MI0005946

Description

Physcomitrella patens ppt-MIR902l precursor miRNA

Literature search

2 open access papers mention ppt-MIR902l
(2 sentences)

Sequence

auuagcaacugcugcacugguuaucucucucgucUAUGUUGCAGAUUCUUCAUUUgcaaaacugaucauagaaguuaagugaaAGAAGGAUCUGCAACAUAUACaagaacggauaaucggaugugaugaugagc
...(((....)))(((((((((((((.(((.((.(((((((((((((((((.(((((..((((.........))))..))))).))))))))))))))))).)).)))..)))))))))).)))..........

Structure

auuagcaacugcu   -          -c   c  c                 A     aa    gau 
             gca cugguuaucu  ucu gu UAUGUUGCAGAUUCUUC UUUgc  aacu   c
             ||| ||||||||||  ||| || ||||||||||||||||| |||||  ||||   a
             ugu ggcuaauagg  aga CA AUACAACGUCUAGGAAG aagug  uuga   u
---cgaguaguag   a          ca   a  U                 A     aa    aga 

Annotation confidence Low

Genome context

Chr26: 6398753-6398886 [+]

Mature ppt-miR902l-5p

• Accession: MIMAT0005087
• Description: Physcomitrella patens ppt-miR902l-5p mature miRNA
• Sequence: 35 - UAUGUUGCAGAUUCUUCAUUU - 55
• Evidence: experimental ; 454 [1]

Mature ppt-miR902l-3p

• Accession: MIMAT0005088
• Description: Physcomitrella patens ppt-miR902l-3p mature miRNA
• Sequence: 84 - AGAAGGAUCUGCAACAUAUAC - 104
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769