Stem-loop ppt-MIR1222c

Accession

MI0005948

Description

Physcomitrella patens ppt-MIR1222c precursor miRNA

Sequence

cgagcgugaaaaaacuugcuacaaucauuuucguaccagugcguuccuccaaaccaccacgcucacguugaugcgaaguugguCUGAAGGAGUUCAUUGGUACAcaaaucauaagagcauggaggaccggagaa
..............(.((((......((((..(((((((((..(((((.((.(((((..((((((...))).)))..).)))).)).)))))..)))))))))..))))......)))).).............

Structure

cgagcgugaaaaaa u    acaauc    uc         cg     c  a    - ca   -   c 
              c ugcu      auuu  guaccagug  uuccu ca acca c  cgc uca  
              | ||||      ||||  |||||||||  ||||| || |||| |  ||| ||| g
              g acga      uaaa  CAUGGUUAC  GAGGA GU uggu g  gcg agu  
-aagaggccaggag u    gaauac    cA         UU     A  C    u aa   u   u 

Annotation confidence Not enough data

Genome context

Chr15: 3129955-3130088 [-]

Mature ppt-miR1222c

• Accession: MIMAT0005090
• Description: Physcomitrella patens ppt-miR1222c mature miRNA
• Sequence: 84 - CUGAAGGAGUUCAUUGGUACA - 104
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769