Accession
MI0005951
Description
Physcomitrella patens
ppt-MIR1223b precursor miRNA
Sequence
31799
reads,
1416.0
reads per million, 10 experiments
uuauaacaacucuccaaggcuggauguccagcaAGGGUGUGUGGCUCUAUAAUCUagagcuaaagcuagaaauccacugcuguugcgaucgaUUGUAGAGUCAUACACCUCUAcuggccuuccagucuguuugcucacagcuu
................((((((((.(.((((...((((((((((((((((((((.(..((...(((.((.......)))))...))..).))))))))))))))))))))...)))).).))))))))....(((...)))..
................((((((((.(.((((...((((((((((((((((((((.(..((...(((.((.......)))))...))..).))))))))))))))))))))...)))).).))))))))....(((...)))..
Structure
uuauaacaacucucca u u caA U ga uaa u aa
aggcugga g ccag GGGUGUGUGGCUCUAUAAUC a gc agc ag a
|||||||| | |||| |||||||||||||||||||| | || ||| || u
ucugaccu c gguc UCCACAUACUGAGAUGUUag u cg ucg uc c
-uucgacacucguuug u c AUC c ag uug - ac
Annotation confidence
High
Do you think this miRNA is real?
Genome context
Chr05: 18717265-18717407 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from ppt-MIR1223b
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ppt-miR1223b-5p
| Accession | MIMAT0053717 |
| Description | Physcomitrella patens ppt-miR1223b-5p mature miRNA |
| Sequence | 34 - AGGGUGUGUGGCUCUAUAAUCU - 55 |
| Evidence |
experimental
unknown |
Mature ppt-miR1223b-3p
| Accession | MIMAT0005093 |
| Description | Physcomitrella patens ppt-miR1223b-3p mature miRNA |
| Sequence | 93 - UUGUAGAGUCAUACACCUCUA - 113 |
| Evidence |
experimental
454 [1] |
References
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