Stem-loop ppt-MIR1223b

Accession

MI0005951

Description

Physcomitrella patens ppt-MIR1223b precursor miRNA

Sequence

uuauaacaacucuccaaggcuggauguccagcaaggguguguggcucuauaaucuagagcuaaagcuagaaauccacugcuguugcgaucgaUUGUAGAGUCAUACACCUCUAcuggccuuccagucuguuugcucacagcuu
................((((((((.(.((((...((((((((((((((((((((.(..((...(((.((.......)))))...))..).))))))))))))))))))))...)))).).))))))))....(((...)))..

Structure

uuauaacaacucucca        u u    caa                    u ga  uaa   u  aa 
                aggcugga g ccag   ggguguguggcucuauaauc a  gc   agc ag  a
                |||||||| | ||||   |||||||||||||||||||| |  ||   ||| ||  u
                ucugaccu c gguc   UCCACAUACUGAGAUGUUag u  cg   ucg uc  c
-uucgacacucguuug        u c    AUC                    c ag  uug   -  ac 

Annotation confidence Not enough data

Genome context

Chr05: 18717265-18717407 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ppt-MIR1223b

Mature ppt-miR1223b

• Accession: MIMAT0005093
• Description: Physcomitrella patens ppt-miR1223b mature miRNA
• Sequence: 93 - UUGUAGAGUCAUACACCUCUA - 113
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769