Accession
MI0005952
Description
Physcomitrella patens
ppt-MIR1223c precursor miRNA
Sequence
32893
reads,
1464.0
reads per million, 10 experiments
agguucacucuauucaagguuggauugucagcaAAGGUGUGCGACUCUAUAAUCcaaagcuugugggaggaauucaccucgccugugaccgaUUGUAGAGUCAUACACCUCUAcugaccuuccagucucuuugcucacagcuu
................((((((((..(((((...(((((((.((((((((((((....((..(((((..(....)..)))))..))....)))))))))))).)))))))...)))))..))))))))....(((...)))..
................((((((((..(((((...(((((((.((((((((((((....((..(((((..(....)..)))))..))....)))))))))))).)))))))...)))))..))))))))....(((...)))..
Structure
agguucacucuauuca uu caA C caaa uu ag a
agguugga gucag AGGUGUG GACUCUAUAAUC gc guggg g a
|||||||| ||||| ||||||| |||||||||||| || ||||| |
ucugaccu caguc UCCACAU CUGAGAUGUUag ug cgcuc c u
-uucgacacucguuuc uc AUC A ccag uc ca u
Annotation confidence
High
Do you think this miRNA is real?
Genome context
Chr06: 2754144-2754286 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ppt-MIR1223c
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ppt-miR1223c-5p
| Accession | MIMAT0053718 |
| Description | Physcomitrella patens ppt-miR1223c-5p mature miRNA |
| Sequence | 34 - AAGGUGUGCGACUCUAUAAUC - 54 |
| Evidence |
experimental
unknown |
Mature ppt-miR1223c-3p
| Accession | MIMAT0005094 |
| Description | Physcomitrella patens ppt-miR1223c-3p mature miRNA |
| Sequence | 93 - UUGUAGAGUCAUACACCUCUA - 113 |
| Evidence |
experimental
454 [1] |
References
|
