Accession
MI0005953
Description
Physcomitrella patens
ppt-MIR1223d precursor miRNA
Sequence
27481
reads,
1225.0
reads per million, 10 experiments
gcggcgauggauacuagacucgaggucgaacaAGGGUGUGUGACCCUACAAUCcgaaacgcgagacuuaaugcuucgccugcgaUUGUAGAGUCAUACACCUCUgcuagccuuccggucuuccgcucuaagcua
((...((((((....(((((.(((((....((.(((((((((((.((((((((.(....(((((.(.....).)))))...))))))))).))))))))))).))...)))))..))))))))).))...))..
((...((((((....(((((.(((((....((.(((((((((((.((((((((.(....(((((.(.....).)))))...))))))))).))))))))))).))...)))))..))))))))).))...))..
Structure
-- ggc - uacu -c cgaa A C c aaac a u gc ga ugga agacu gaggu ca GGGUGUGUGAC CUACAAUC g gcgag c u || || |||| ||||| ||||| || ||||||||||| |||||||| | ||||| | a cg cu gccu ucugg uuccg gU UCCACAUACUG GAUGUUag c cgcuu g a au aau c ---- cc -auc C A - -guc c u
Annotation confidence
High
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Genome context
Chr16: 14296041-14296174 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ppt-MIR1223d
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ppt-miR1223d-5p
| Accession | MIMAT0061198 |
| Description | Physcomitrella patens ppt-miR1223d-5p mature miRNA |
| Sequence | 33 - AGGGUGUGUGACCCUACAAUC - 53 |
| Evidence |
experimental
Illumina [1] |
Mature ppt-miR1223d-3p
| Accession | MIMAT0005095 |
| Description | Physcomitrella patens ppt-miR1223d-3p mature miRNA |
| Sequence | 85 - UUGUAGAGUCAUACACCUCU - 104 |
| Evidence |
experimental
454 [1] |
References
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