Accession
MI0005954
Description
Physcomitrella patens
ppt-MIR1223e precursor miRNA
Sequence
2631
reads,
119.0
reads per million, 10 experiments
ugaccaugacaagcaauggagcuucgacaAGGGUGUUUGACUCUACUACCcgugaaccccaucagauggagauauguggUUGUAGAGUCAUGCACCUCUGccgaggcuccugcuuuuuacuccuuu
......(((.(((((..(((((((((.((.((((((.(((((((((.(((((((..(.((((...)))).).)))).))).))))))))).)))))).)).)))))))))))))).))).......
......(((.(((((..(((((((((.((.((((((.(((((((((.(((((((..(.((((...)))).).)))).))).))))))))).)))))).)).)))))))))))))).))).......
Structure
-ugacca c au a A U U - aa c c
uga aagca ggagcuucg ca GGGUGU UGACUCUAC ACC cgug c ccau
||| ||||| ||||||||| || |||||| ||||||||| ||| |||| | |||| a
auu uucgu ccucggagc GU UCCACG ACUGAGAUG Ugg guau g ggua
uuuccuc u -- c C U U u -a a g
Annotation confidence
High
Do you think this miRNA is real?
Genome context
Chr25: 8370886-8371011 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ppt-MIR1223e
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ppt-miR1223e-5p
| Accession | MIMAT0061199 |
| Description | Physcomitrella patens ppt-miR1223e-5p mature miRNA |
| Sequence | 30 - AGGGUGUUUGACUCUACUACC - 50 |
| Evidence |
experimental
Illumina [1] |
Mature ppt-miR1223e-3p
| Accession | MIMAT0005096 |
| Description | Physcomitrella patens ppt-miR1223e-3p mature miRNA |
| Sequence | 80 - UUGUAGAGUCAUGCACCUCUG - 100 |
| Evidence |
experimental
454 [1] |
References
|
