Accession
MI0005955
Description
Physcomitrella patens
ppt-MIR1223f precursor miRNA
Sequence
2883
reads,
130.0
reads per million, 10 experiments
cgcaaugaaauggaacagcauggagcuucagcaAGGGUGCUUGACUUUAUAACCcggcuuaaauuaaucguggUUGUAGAGUCAUGCACCUCUGcuggcucuccugcuuggacauuauacuugu
.((((((.((((...(((((.((((..((((((.((((((.((((((((((((((((.(((...)))))).))))))))))))).)))))).))))))..))))))).))..)))).)).))))
.((((((.((((...(((((.((((..((((((.((((((.((((((((((((((((.(((...)))))).))))))))))))).)))))).))))))..))))))).))..)))).)).))))
Structure
c - a gaa - u cu A U - c a gcaa ug aaug ca gca ggag ucagca GGGUGC UGACUUUAUAACC cgg uua |||| || |||| || ||| |||| |||||| |||||| ||||||||||||| ||| ||| a uguu au uuac gu cgu ccuc ggucGU UCCACG ACUGAGAUGUUgg gcu aau - c a -ag u - uc C U u - u
Annotation confidence
High
Do you think this miRNA is real?
Genome context
Chr05: 18718219-18718342 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from ppt-MIR1223f
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ppt-miR1223f-5p
| Accession | MIMAT0053719 |
| Description | Physcomitrella patens ppt-miR1223f-5p mature miRNA |
| Sequence | 34 - AGGGUGCUUGACUUUAUAACC - 54 |
| Evidence |
experimental
unknown |
Mature ppt-miR1223f-3p
| Accession | MIMAT0005097 |
| Description | Physcomitrella patens ppt-miR1223f-3p mature miRNA |
| Sequence | 74 - UUGUAGAGUCAUGCACCUCUG - 94 |
| Evidence |
experimental
454 [1] |
References
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