Accession
MI0005956
Description
Physcomitrella patens
ppt-MIR1223g precursor miRNA
Sequence
2767
reads,
125.0
reads per million, 10 experiments
aguguauugaucagcguggagcuucagcauGGGUGUUUGACCUUACAACUCGGCauugaucaaucguggUUGUAGAGUCAUGCACCUCUGccgacucuccggcucuguguacugcu
(((((((.....(((.(((((..((.(((.((((((.((((.(((((((((((..........))).)))))))).)))).)))))).))).))..))))))))....)))).)))
(((((((.....(((.(((((..((.(((.((((((.((((.(((((((((((..........))).)))))))).)))).)))))).))).))..))))))))....)))).)))
Structure
- ugauc g cu a u U C - Cauu agu guau agc uggag uc gca GGGUGU UGAC UUACAACU CGG g ||| |||| ||| ||||| || ||| |||||| |||| |||||||| ||| ucg caug ucg gccuc ag cGU UCCACG ACUG GAUGUUgg gcu a u -uguc - uc c C U A u aacu
Annotation confidence
High
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Genome context
Chr06: 2753121-2753236 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ppt-MIR1223g
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ppt-miR1223g-5p
| Accession | MIMAT0053720 |
| Description | Physcomitrella patens ppt-miR1223g-5p mature miRNA |
| Sequence | 31 - GGGUGUUUGACCUUACAACUCGGC - 54 |
| Evidence |
experimental
unknown |
Mature ppt-miR1223g-3p
| Accession | MIMAT0005098 |
| Description | Physcomitrella patens ppt-miR1223g-3p mature miRNA |
| Sequence | 70 - UUGUAGAGUCAUGCACCUCUG - 90 |
| Evidence |
experimental
454 [1] |
References
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