Accession
MI0005957
Description
Physcomitrella patens
ppt-MIR1223h precursor miRNA
Sequence
601
reads,
29.0
reads per million, 10 experiments
gagugagugggucagcagcauggagguucgacaAGGGUGCUUGGCCCUACUACCcgugaacccacccaaggagagacguggUUGUAGAGUCACGCACCUCUGccgagccuccugcucguugugcuucuucuu
(((.(((.((..((((((((.(((((((((.((.((((((.((((.((((.((((((....((......))....))).))).)))).)))).)))))).)).))))))))))))).))))..)).))))))
(((.(((.((..((((((((.(((((((((.((.((((((.((((.((((.((((((....((......))....))).))).)))).)))).)))))).)).))))))))))))).))))..)).))))))
Structure
u u gu - u a A U C U - gaac ac gag gag gg cagc agca ggagguucg ca GGGUGC UGGC CUAC ACC cgu cc c ||| ||| || |||| |||| ||||||||| || |||||| |||| |||| ||| ||| || uuc uuc uc guug ucgu ccuccgagc GU UCCACG ACUG GAUG Ugg gca gg c - u gu c - c C C A U u gaga aa
Annotation confidence
High
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Genome context
Chr16: 14295273-14295404 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ppt-MIR1223h
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ppt-miR1223h-5p
| Accession | MIMAT0061200 |
| Description | Physcomitrella patens ppt-miR1223h-5p mature miRNA |
| Sequence | 34 - AGGGUGCUUGGCCCUACUACC - 54 |
| Evidence |
experimental
Illumina [1] |
Mature ppt-miR1223h-3p
| Accession | MIMAT0005099 |
| Description | Physcomitrella patens ppt-miR1223h-3p mature miRNA |
| Sequence | 82 - UUGUAGAGUCACGCACCUCUG - 102 |
| Evidence |
experimental
454 [1] |
References
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