Accession
MI0005958
Description
Physcomitrella patens
ppt-MIR1223i precursor miRNA
Sequence
1045
reads,
48.0
reads per million, 10 experiments
caagccucguucagcagggugcuucagcaAGGGUGCUUGAUUCUACUACCcgucgacccauuagaggagcgacgcggUUGUAGAGUCACGCACCUCUGuugagcacccugcucggaguaaagau
.....(((....(((((((((((.(((((.((((((.(((((((((.((((((((..((......))..))))).))).))))))))).)))))).))))))))))))))))..))).......
.....(((....(((((((((((.(((((.((((((.(((((((((.((((((((..((......))..))))).))).))))))))).)))))).))))))))))))))))..))).......
Structure
--caagc guuc u A U U - ac au
cuc agcagggugcu cagca GGGUGC UGAUUCUAC ACC cgucg cc u
||| ||||||||||| ||||| |||||| ||||||||| ||| ||||| ||
gag ucgucccacga guuGU UCCACG ACUGAGAUG Ugg gcagc gg a
uagaaau --gc - C C U c ga ag
Annotation confidence
High
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Genome context
Chr25: 8371150-8371273 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ppt-MIR1223i
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ppt-miR1223i-5p
| Accession | MIMAT0053721 |
| Description | Physcomitrella patens ppt-miR1223i-5p mature miRNA |
| Sequence | 30 - AGGGUGCUUGAUUCUACUACC - 50 |
| Evidence |
experimental
unknown |
Mature ppt-miR1223i-3p
| Accession | MIMAT0005100 |
| Description | Physcomitrella patens ppt-miR1223i-3p mature miRNA |
| Sequence | 78 - UUGUAGAGUCACGCACCUCUG - 98 |
| Evidence |
experimental
454 [1] |
References
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