Stem-loop ppt-MIR1223i

Accession

MI0005958

Description

Physcomitrella patens ppt-MIR1223i precursor miRNA

Sequence

caagccucguucagcagggugcuucagcaagggugcuugauucuacuacccgucgacccauuagaggagcgacgcggUUGUAGAGUCACGCACCUCUGuugagcacccugcucggaguaaagau
.....(((....(((((((((((.(((((.((((((.(((((((((.((((((((..((......))..))))).))).))))))))).)))))).))))))))))))))))..))).......

Structure

--caagc   guuc           u     a      u         u   -     ac  au 
       cuc    agcagggugcu cagca gggugc ugauucuac acc cgucg  cc  u
       |||    ||||||||||| ||||| |||||| ||||||||| ||| |||||  ||   
       gag    ucgucccacga guuGU UCCACG ACUGAGAUG Ugg gcagc  gg  a
uagaaau   --gc           -     C      C         U   c     ga  ag 

Annotation confidence Not enough data

Genome context

Chr25: 8371150-8371273 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppt-MIR1223i

Mature ppt-miR1223i

• Accession: MIMAT0005100
• Description: Physcomitrella patens ppt-miR1223i mature miRNA
• Sequence: 78 - UUGUAGAGUCACGCACCUCUG - 98
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769