Accession
MI0005959
Description
Physcomitrella patens
ppt-MIR1223j precursor miRNA
Sequence
1985
reads,
89.0
reads per million, 10 experiments
cccuucaacacaaggcugaagggucagcaAGGGUGUGUGACUCUACUAUCUgaacugugcgauuugauugccucguaaugaggcguacauaaagcuuuugaUUGUAGAGUCAUGCACCUCUAcugggccuucagucuaauuuuucugc
............((((((((((.((((...((((((((((((((((.(((.(((....((........((((((.....))))))........))))).))).))))))))))))))))...)))).))))))))))...........
............((((((((((.((((...((((((((((((((((.(((.(((....((........((((((.....))))))........))))).))).))))))))))))))))...)))).))))))))))...........
Structure
cccuucaacaca g caA U U cugu gauuugau g
aggcugaagg ucag GGGUGUGUGACUCUAC AUC gaa gc ugccuc u
|||||||||| |||| |||||||||||||||| ||| ||| || |||||| a
ucugacuucc gguc UCCACGUACUGAGAUG Uag uuu cg gcggag a
-cgucuuuuuaa g AUC U u ---- aaauacau u
Annotation confidence
High
Do you think this miRNA is real?
Genome context
Chr05: 18717592-18717739 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from ppt-MIR1223j
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ppt-miR1223j-5p
| Accession | MIMAT0053722 |
| Description | Physcomitrella patens ppt-miR1223j-5p mature miRNA |
| Sequence | 30 - AGGGUGUGUGACUCUACUAUCU - 51 |
| Evidence |
experimental
unknown |
Mature ppt-miR1223j-3p
| Accession | MIMAT0005101 |
| Description | Physcomitrella patens ppt-miR1223j-3p mature miRNA |
| Sequence | 102 - UUGUAGAGUCAUGCACCUCUA - 122 |
| Evidence |
experimental
454 [1] |
References
|
